PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G329700.1.p
Common NameGLYMA_13G329700, LOC100777102
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 477aa    MW: 52685.7 Da    PI: 7.6544
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G329700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17136185155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.13G329700.1.p 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                          78*******************......55************************998 PP
2AP241.24.1e-13228278155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Glyma.13G329700.1.p 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 278
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16136193IPR016177DNA-binding domain
PROSITE profilePS5103217.82137193IPR001471AP2/ERF domain
CDDcd000182.14E-11137192No hitNo description
SMARTSM003801.8E-31137199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-17137193IPR001471AP2/ERF domain
PfamPF008471.2E-8228278IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17228287IPR016177DNA-binding domain
CDDcd000184.46E-26228288No hitNo description
PROSITE profilePS5103215.527229286IPR001471AP2/ERF domain
SMARTSM003801.0E-32229292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15229286IPR001471AP2/ERF domain
PRINTSPR003675.0E-6230241IPR001471AP2/ERF domain
PRINTSPR003675.0E-6268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLDLNLTAES TQNDELLVLL DKFPEASSGT SNSSIVNAEG SSNEDSCSTR AGDVFTFNFG  60
ILKVEAANDV VAAATKELFP VSSENWQGQS STSLFQARKS LMDLSLDQQH GEVKVVQVQP  120
QPKVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGLDADI NFNLVDYEED LKQMKNLSKE EFVHILRRHS SGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE AVTNFEPSTY ESEMKPEAIN  300
EGGSHDLDLS LGIATPGHGP KENRGHLQFQ SIPYNMHPGR SSMMETNINS VIGDPSLKRL  360
VVTEERPSVW NAAYSTFFPN LERAERMGTD PSKGVPNPNW AWQTHGQVTD TPVPPFSTAA  420
SSGFSISATF PSTAIFPTKS INSVPHSLCF TSPSTPGSNA PQFYNYYEVK SPQPPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.350240.0cotyledon| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates progressively in panicles. Present at low levels in developing seeds, with a progressive decrease during development (PubMed:20713616). In spikelets, fades out progressively after anthesis (PubMed:25817414). {ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:25817414}.
UniprotTISSUE SPECIFICITY: Mostly expressed in roots, seedlings and leaves and, to a lower extent, in stems, panicles and developing seeds (PubMed:20713616). Present in spikelets (PubMed:25817414). {ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:25817414}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes (PubMed:20713616). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G329700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Repressed by SRT1 via epigenetic histone H3K9 acetylation (H3K9ac) regulation (PubMed:27181944). {ECO:0000269|PubMed:27181944, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542008.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ2TQ341e-109AP21_ORYSJ; APETALA2-like protein 1
TrEMBLI1M4P40.0I1M4P4_SOYBN; Uncharacterized protein
STRINGGLYMA13G40470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-103related to AP2.7
Publications ? help Back to Top
  1. Fu FF,Xue HW
    Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator.
    Plant Physiol., 2010. 154(2): p. 927-38
    [PMID:20713616]
  2. Sekhar S, et al.
    Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.
    J. Plant Physiol., 2015. 179: p. 21-34
    [PMID:25817414]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Zhang H,Lu Y,Zhao Y,Zhou DX
    OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression.
    Plant Sci., 2016. 248: p. 28-36
    [PMID:27181944]
  5. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]