PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G316900.2.p
Common NameGLYMA_13G316900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 352aa    MW: 39827.4 Da    PI: 7.1516
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G316900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-104882438
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38
                          k+ rr+++NReAAr+sR+RKka++++Le    +L
  Glyma.13G316900.2.p 48 AKALRRLAQNREAARKSRLRKKAYVQQLESSRLKL 82
                         6999*************************865555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-745110IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.5E-84691No hitNo description
PROSITE profilePS502179.1744791IPR004827Basic-leucine zipper domain
PfamPF001702.1E-74884IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-74992No hitNo description
CDDcd147083.86E-214999No hitNo description
PROSITE patternPS0003605267IPR004827Basic-leucine zipper domain
PfamPF141441.5E-28130204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MADNDAFCYP YHIDGCMPLE KWSKGPQDSE MLPRRKGDGS TSEKPLDAKA LRRLAQNREA  60
ARKSRLRKKA YVQQLESSRL KLTQIEQELQ RARSQGLFVD YGGVGSTVSS GAAMFDMEYA  120
RWLEEDHRLM GELRNGLQAP LSDSNMRVMV DGYLSHYDEI FRLKVVAAKS DVFHLINGMW  180
TSQAERCFLW IGGFRPSDLI TMLIQQLEPL AEQQIMGMYG LRHSSQQAEE ALSQGLEQLQ  240
QSLVDTIAGG PVVDGVQQMV LAMSKLANLE GFVRQADNLR QQTLHQLCRL LTVRQAARCF  300
IVIGEYYGRL RALSSLWASR PRETLISDDN SCQTTTEMQI VQHSQNYFSS F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278940.0hypocotyl| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G316900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352341e-130AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635458.10.0transcription factor TGA9 isoform X3
SwissprotQ93XM61e-172TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0R0H9640.0A0A0R0H964_SOYBN; Uncharacterized protein
STRINGGLYMA13G39325.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-155bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]