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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G311200.7.p |
| Common Name | GLYMA_13G311200, LOC100815973 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
YABBY |
| Protein Properties |
Length: 132aa MW: 14873.6 Da PI: 9.9257 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G311200.7.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 145.1 | 7.4e-45 | 11 | 108 | 72 | 170 |
YABBY 72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
+++++ ++++l++++ +++ +s + +++++ ++++ pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWa
Glyma.13G311200.7.p 11 QDTTQLQRQHLSVQEACSKELGSSSKCKTFETVDHDQQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWA 99
6778888999998888888888888888888888999999999.9********************************************* PP
YABBY 162 hfPkihfgl 170
hfP+ihfgl
Glyma.13G311200.7.p 100 HFPHIHFGL 108
*******97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 132 aa
Download sequence Send
to blast |
MGASLQTFPS QDTTQLQRQH LSVQEACSKE LGSSSKCKTF ETVDHDQQPR IPPIRPPEKR 60
QRVPSAYNRF IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKL DGNKQAKLDQ 120
GDGTQKSNGF Y*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
