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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G311200.2.p |
| Common Name | GLYMA_13G311200, LOC100815973 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
YABBY |
| Protein Properties |
Length: 189aa MW: 21086 Da PI: 8.9629 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G311200.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 233.5 | 4.9e-72 | 6 | 165 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94
++e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++ll+vn+ + q+ ++++ + + + + + ++++l++++ +++ +
Glyma.13G311200.2.p 6 MATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNMGASLQTFPSQDT---TQRFSTVGK--LQRQHLSVQEACSKELGS 90
579*****************************************************97...333333444..444445444444444444 PP
YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
s + +++++ ++++ pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
Glyma.13G311200.2.p 91 SSKCKTFETVDHDQQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 165
44444566666777799999.9****************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SLLTIVTVRC GHCANLLTVN MGASLQTFPS 60
QDTTQRFSTV GKLQRQHLSV QEACSKELGS SSKCKTFETV DHDQQPRIPP IRPPEKRQRV 120
PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQAKLDQGDG 180
TQKSNGFY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
