PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G305500.1.p
Common NameGLYMA_13G305500, LOC100803143
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 232aa    MW: 25842.3 Da    PI: 8.2029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G305500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-1081127554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +  rE+ RRd++N++f eL ++l ++   +++K +K++iL  A + + +L
  Glyma.13G305500.1.p  81 KACREKLRRDKLNERFLELSSILEPS---RQPKSDKVAILSDAARVVIQL 127
                          678***********************...9*************9887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-1369143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.17676127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-880127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-780130No hitNo description
SMARTSM003531.0E-782133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1183140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1706.3E-4141173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDVNSSGGAS DWLYDYGFDI PVAGSDFMAS DSGGFRWGPQ SHNFKGPSNM SLEMEYSLDS  60
TVMENGPSKR LRTESCASGS KACREKLRRD KLNERFLELS SILEPSRQPK SDKVAILSDA  120
ARVVIQLRNE AKRLKEMNDE LQAKVKELKG EKNELRDEKN RLKEEKEKLE QQVKVANIQP  180
SFLPQAPDAK GQVGSHKLIP FIGYPGIAMW QFMSPAAVDT SKDHLLRPPV A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.231090.0hypocotyl| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G305500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971260.0BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543375.11e-171transcription factor bHLH115
RefseqXP_006594876.11e-171transcription factor bHLH115
SwissprotQ9C6821e-69BH115_ARATH; Transcription factor bHLH115
TrEMBLI1M4111e-170I1M411_SOYBN; Uncharacterized protein
STRINGGLYMA13G38140.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149161214
Representative plantOGRP7551766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.17e-64bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]