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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G305500.1.p | ||||||||
Common Name | GLYMA_13G305500, LOC100803143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25842.3 Da PI: 8.2029 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 81 | 127 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f eL ++l ++ +++K +K++iL A + + +L Glyma.13G305500.1.p 81 KACREKLRRDKLNERFLELSSILEPS---RQPKSDKVAILSDAARVVIQL 127 678***********************...9*************9887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-13 | 69 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.176 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-8 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.97E-7 | 80 | 130 | No hit | No description |
SMART | SM00353 | 1.0E-7 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 83 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 6.3E-4 | 141 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDVNSSGGAS DWLYDYGFDI PVAGSDFMAS DSGGFRWGPQ SHNFKGPSNM SLEMEYSLDS 60 TVMENGPSKR LRTESCASGS KACREKLRRD KLNERFLELS SILEPSRQPK SDKVAILSDA 120 ARVVIQLRNE AKRLKEMNDE LQAKVKELKG EKNELRDEKN RLKEEKEKLE QQVKVANIQP 180 SFLPQAPDAK GQVGSHKLIP FIGYPGIAMW QFMSPAAVDT SKDHLLRPPV A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.23109 | 0.0 | hypocotyl| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G305500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097126 | 0.0 | BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543375.1 | 1e-171 | transcription factor bHLH115 | ||||
Refseq | XP_006594876.1 | 1e-171 | transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 1e-69 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | I1M411 | 1e-170 | I1M411_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G38140.1 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14916 | 12 | 14 |
Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 7e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G305500.1.p |
Entrez Gene | 100803143 |
Publications ? help Back to Top | |||
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