PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G303100.1.p | ||||||||
Common Name | GLYMA_13G303100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 28905.1 Da PI: 5.1605 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.5e-10 | 3 | 62 | 6 | 46 |
HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqk 46 ++Ed +l+ + ++G+ W+ Ia +++ gRt++++k++w++ Glyma.13G303100.1.p 3 EQEDRKLIAYASRYGSWnwrqlprfadvkiklvnyfeVWSVIATHLP-GRTDNEIKNHWHT 62 79*************88******************************.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.696 | 1 | 68 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.3E-8 | 3 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.39E-9 | 3 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-6 | 3 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-14 | 3 | 65 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKEQEDRKLI AYASRYGSWN WRQLPRFADV KIKLVNYFEV WSVIATHLPG RTDNEIKNHW 60 HTPLRKRFGK NAVHSNKKVK ATKSNSSESK QDKDSIENAN SRPQPRIILT PQLPLKKTCY 120 SDFLDACLES EDVNENIWTE SYVANISNSN TPMAENGKGS SNFHGSDAAG TIMDYNENLV 180 LENDDFGFLV ALQPTATTEN FWTDVYAADM SLVPNELLAP WVNESEEYFS SMYDADLWCQ 240 TNFHDLHLGL FH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G303100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028194055.1 | 1e-101 | transcription factor MYB8-like | ||||
TrEMBL | A0A0R0GW96 | 0.0 | A0A0R0GW96_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G32541.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16747 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 8e-14 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G303100.1.p |