 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.13G290500.1.p |
| Common Name | GLYMA_13G290500, LOC100811154 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
Trihelix |
| Protein Properties |
Length: 307aa MW: 34098.4 Da PI: 10.7191 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G290500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 53 | 8.8e-17 | 29 | 119 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
+W+++ + +Liea +++ +l+rg+l++ +W+ev++++ +++ +r+ +qCk++++ l+k+yk +k++ ++ +s +t+p+f++
Glyma.13G290500.1.p 29 CWSEEATFTLIEAWGQRHLELNRGNLRQRHWQEVADAVnarhghVSTKARRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATTWPFFRR 117
7*************************************99988888899***********************99985.778889*****9 PP
trihelix 85 le 86
l+
Glyma.13G290500.1.p 118 LD 119
97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MDSIAGAPPH ADVTPPPPRQ SPFPGREDCW SEEATFTLIE AWGQRHLELN RGNLRQRHWQ 60
EVADAVNARH GHVSTKARRT DVQCKNRIDT LKKKYKIEKA RVSDSGDSAT TWPFFRRLDF 120
LIGDNFPAKK PSPPATAGIT RRSTPPAKSP PWAVIPVGPR SGTKKRPAAA KPASASPDSV 180
ANSYFRRNFS VFAAAAAAAA AAAADSENSN GSKWSSGSEK GTMKKKRTRG DWEFGYREMA 240
EALEKFGEIY ERVEGAKQRQ MVELEKQRMQ FAKDLETQRM KLFMETQVHL QKINRSKRSS 300
ASDSVS*
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 5e-69 | sequence-specific DNA binding transcription factors |
