PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G290500.1.p
Common NameGLYMA_13G290500, LOC100811154
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 307aa    MW: 34098.4 Da    PI: 10.7191
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G290500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix538.8e-1729119186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                          +W+++ + +Liea  +++ +l+rg+l++ +W+ev++++       +++ +r+ +qCk++++ l+k+yk +k++ ++   +s +t+p+f++
  Glyma.13G290500.1.p  29 CWSEEATFTLIEAWGQRHLELNRGNLRQRHWQEVADAVnarhghVSTKARRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATTWPFFRR 117
                          7*************************************99988888899***********************99985.778889*****9 PP

             trihelix  85 le 86 
                          l+
  Glyma.13G290500.1.p 118 LD 119
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2627120No hitNo description
SMARTSM005950.001137128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDSIAGAPPH ADVTPPPPRQ SPFPGREDCW SEEATFTLIE AWGQRHLELN RGNLRQRHWQ  60
EVADAVNARH GHVSTKARRT DVQCKNRIDT LKKKYKIEKA RVSDSGDSAT TWPFFRRLDF  120
LIGDNFPAKK PSPPATAGIT RRSTPPAKSP PWAVIPVGPR SGTKKRPAAA KPASASPDSV  180
ANSYFRRNFS VFAAAAAAAA AAAADSENSN GSKWSSGSEK GTMKKKRTRG DWEFGYREMA  240
EALEKFGEIY ERVEGAKQRQ MVELEKQRMQ FAKDLETQRM KLFMETQVHL QKINRSKRSS  300
ASDSVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212040.0leaf| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G290500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543305.10.0trihelix transcription factor ASIL2
TrEMBLI1M3L60.0I1M3L6_SOYBN; Uncharacterized protein
STRINGGLYMA13G36650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-69sequence-specific DNA binding transcription factors