PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G284400.6.p
Common NameGLYMA_13G284400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 425aa    MW: 46824.4 Da    PI: 5.684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G284400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.6e-063143531054
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Glyma.13G284400.6.p 314 KVRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 353
                          56888999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.011304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-7314357No hitNo description
SuperFamilySSF474591.13E-11314370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0025315359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-10318361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MADNDQFQAS GNWWETARSV RYESGASQSS SSAITNIGNN FGWQQGSDMA DMKPRSSMDS  60
SSVVFHDTQN NKLQQPDSAT STDPNLHMMG LGLSSQTMDW NQASLLRGEK GTENSFRSML  120
QENLSSSRTN FQQETGNMGL SQQVQWRSEK MFSSESSTNE FKQVNNRGGG GFSLDQSQFS  180
PQYSSGDSTV TSQGLPSSNF QIDSSALYGT PSILQGLLGP DHNNQPQQQQ PMSFPYQTTS  240
YGLNSNELVP SWSKVPQFLR ASPPKQPPNN QLHFTNNATF WNDSEAANNK DVRPSFFPSL  300
QPPFSTPNFE VQSKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVTAL  360
STPYMKSGAP MQIQQNSGKS KEAEGPKQDL RSRGLCLVPV SSTFPVTHET TVDFWTPTFG  420
GTSR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.281100.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G284400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-175AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541866.10.0transcription factor bHLH123
RefseqXP_028191867.10.0transcription factor bHLH123-like isoform X1
RefseqXP_028191868.10.0transcription factor bHLH123-like isoform X1
SwissprotQ8GXT33e-72BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0R0GV850.0A0A0R0GV85_SOYBN; Uncharacterized protein
STRINGGLYMA13G36010.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]