PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 459aa MW: 50514.5 Da PI: 6.5313

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G284400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	351	389	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Glyma.13G284400.3.p 351 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 389 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.481	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-10	350	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-6	350	392	No hit	No description
SMART	SM00353	0.0099	351	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-8	354	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MADNDQFQAS GNWWETARSV RYESGASQSS SSAITNIGNN FGWQQGSDMA DMKPRSSMDS 60 SSVVFHDTQN NKLQQPDSAT STDPNLHMMG LGLSSQTMDW NQASLLRGEK GTENSFRSML 120 QENLSSSRTN FQQETGNMGL SQQVQWRSEK MFSSESSTNE FKQVNNRGGG GFSLDQSQFS 180 PQYSSGDSTV TSQGLPSSNF QIDSSALYGT PSILQGLLGP DHNNQPQQQQ PMSFPYQTTS 240 YGLNSNELVP SWSKVPQFLR ASPPKQPPNN QLHFTNNATF WNDSEAANNK DVRPSFFPSL 300 QPPFSTPNFE VQSKNISEVR ESGTVVKKSG NEPAPKRTRN ESPSPLPAFK VRKEKMGDRI 360 TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQALSTPYMK SGAPMQIQQN SGKSKEAEGP 420 KQDLRSRGLC LVPVSSTFPV THETTVDFWT PTFGGTSR*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MADNDQFQAS GNWWETARSV RYESGASQSS SSAITNIGNN FGWQQGSDMA DMKPRSSMDS  60
SSVVFHDTQN NKLQQPDSAT STDPNLHMMG LGLSSQTMDW NQASLLRGEK GTENSFRSML  120
QENLSSSRTN FQQETGNMGL SQQVQWRSEK MFSSESSTNE FKQVNNRGGG GFSLDQSQFS  180
PQYSSGDSTV TSQGLPSSNF QIDSSALYGT PSILQGLLGP DHNNQPQQQQ PMSFPYQTTS  240
YGLNSNELVP SWSKVPQFLR ASPPKQPPNN QLHFTNNATF WNDSEAANNK DVRPSFFPSL  300
QPPFSTPNFE VQSKNISEVR ESGTVVKKSG NEPAPKRTRN ESPSPLPAFK VRKEKMGDRI  360
TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQALSTPYMK SGAPMQIQQN SGKSKEAEGP  420
KQDLRSRGLC LVPVSSTFPV THETTVDFWT PTFGGTSR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28110	0.0	leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G284400.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-174	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028191870.1	0.0	transcription factor bHLH123-like isoform X3
Swissprot	Q8GXT3	7e-89	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A0R0H3G7	0.0	A0A0R0H3G7_SOYBN; Uncharacterized protein
STRING	GLYMA13G36010.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G284400.3.p
Entrez Gene	100778697

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]