PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G249800.1.p
Common NameGLYMA_13G249800, Glyma13g32320.2, LOC100805087
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 438aa    MW: 47560.8 Da    PI: 4.8937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G249800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-053263631254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Glyma.13G249800.1.p 326 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 363
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.09E-6324368No hitNo description
SuperFamilySSF474591.7E-11324378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-9328371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAEDFQAAIC GENWWNNINP TRSVFPLMPS TCSVAAADHA GNYSTWQSTT DFVDLKGTRS  60
CAELETDNNL SFLDAEKPQQ SESGSILINS TLQMMGFGKS SSTSSNWNQS LLGSGFDSVL  120
QEETGIGGGS QVSTVDALKP MNQEFSLDQQ SLNSVVTSTG SLSGGFPVVS ASYGYPSTLI  180
QSLYEPEPQP QQQNSLFTNP SMSYSSSSAN YGICSNELSP TWSKVSSLPK PSMPKQQLSG  240
LHFSNNTAFW NSSAEALNDI RAGVFTSSQA QYQTAKFEEK PNCPNTLLNK LKREESPDAA  300
KKNSPEPAFK RQRIETPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHEAIEYI  360
KFLHDQVSVL STPYMKNNGA PIQHQQDCDN LKDSEGAKQD LRSRGLCLVP ISSTFPVANE  420
TSVDFWTSTF GGALIGR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386950.0epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G249800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311200.0KT031120.1 Glycine max clone HN_CCL_146 bHLH transcription factor (Glyma13g32320.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541762.10.0transcription factor bHLH112 isoform X1
RefseqXP_028191774.10.0transcription factor bHLH112-like isoform X1
TrEMBLA0A0B2QCQ70.0A0A0B2QCQ7_GLYSO; Transcription factor bHLH112
TrEMBLK7M1S10.0K7M1S1_SOYBN; BHLH transcription factor
STRINGGLYMA13G32320.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-65bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]