PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G241900.1.p

Common Name

GLYMA_13G241900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 279aa MW: 30980.4 Da PI: 7.7255

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G241900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.8	6.3e-35	42	101	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds ntkfCyynny+ sqPr++C+aC+r+WtkGG+lrnvPvGggr++++ + Glyma.13G241900.1.p 42 PSEPLKCPRCDSINTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRVK 101 67899***********************************************97766544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-19	43	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-31	45	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.99	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGLSSKQVSN RGLDWNQTLL EAQNLELPKP PPMRKQQQQT QPSEPLKCPR CDSINTKFCY 60 YNNYNKSQPR HYCRACKRHW TKGGTLRNVP VGGGRKNKRV KKSTTPNTAT ATNSISTTTT 120 TSNTNMDVDD HKTTPSSLYQ SLCLPQQNLM MSTKDSEEGK DFGIGNGIFL SSTVPFPQSQ 180 SLLFPFTTSN SFDTNQCAIS SSLRSSSVYN YGEEFKITEE PTINSIMPNA SGGTNTQPWE 240 IAATSSGLEM SNYWTWEDID SLVSTDLNVP WDDSDIKP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.25018	0.0	flower\| hypocotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G241900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF221751	0.0	EF221751.1 Glycine max Dof6 transcription factor (Dof6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236850.2	0.0	Dof26
Refseq	XP_028186897.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	I1M283	0.0	I1M283_SOYBN; Uncharacterized protein
STRING	GLYMA13G31560.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-24	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Glyma.13G241900.1.p