PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G238300.1.p
Common NameGLYMA_13G238300, LOC100784418
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 182aa    MW: 20895.8 Da    PI: 9.474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G238300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11960255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                         r+  + +Er+RR++++  f +L +l+P++   +sk      + Le+A++YIk+Lq
  Glyma.13G238300.1.p  9 RVDRKFIERNRRNQMKALFRKLNSLVPHQ---RSKEaIPLPDQLEEATNYIKKLQ 60
                         5566789*********************8...77777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-12576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-6564No hitNo description
PROSITE profilePS5088811.744759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-71260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0050832Biological Processdefense response to fungus
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MENNPSSSRV DRKFIERNRR NQMKALFRKL NSLVPHQRSK EAIPLPDQLE EATNYIKKLQ  60
INLEKMKDKK NMLLGNERPN ERMNNDGRRV GLKSPRIEIQ QMGSALEVVL ITGLDSQFMF  120
GETIRVLHEE GVDVVNASYK VIEDAVFHSI HCQDKEETAN GAARISERLK NFIHDSSYNA  180
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G238300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-102AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541734.11e-132transcription factor bHLH162
RefseqXP_028187214.11e-132transcription factor bHLH162-like
TrEMBLA0A445I9531e-131A0A445I953_GLYSO; Transcription factor bHLH162
TrEMBLK7M1J61e-131K7M1J6_SOYBN; Uncharacterized protein
STRINGGLYMA13G31211.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-48bHLH family protein