PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G237500.1.p
Common NameGLYMA_13G237500, LOC778098
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 358aa    MW: 38562.6 Da    PI: 8.2034
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G237500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.2e-3858118262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +++a kcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+r+nk+++
  Glyma.13G237500.1.p  58 QQEAPKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRVK 118
                          67889*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2660116IPR003851Zinc finger, Dof-type
PfamPF027018.8E-3360116IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.11562116IPR003851Zinc finger, Dof-type
PROSITE patternPS01361064100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSANCEKMVA IPPTTNQWPQ VDDHKVLMGS NGGSSNNNNN KVLEKPGQDQ LVQQQQQQQE  60
APKCPRCDSS NTKFCYYNNY SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRRNKRVKRP  120
LITTNPSSAA IDTAASNNSS NSSSAPLQPP IDTASTSNHI NPLFYGLPSS SSDVNLPLFS  180
RFGSRISSSG FDLQLNNALG LGFSSGVLSN EASDNNGYRN WFGSNNTLLS SYTSTTSTTT  240
PAMSSLLSSS LLQQKFMTDG VDSTNTFQHG LGLTPLEQLQ MASDHSSEAG MVALKDVKVE  300
LGQNNRLEWN NGAACQSQIQ HVGLYDPSLY WNNSAATALG VWNDQAANIG SSVTSLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.286720.0epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G237500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572550.0DQ857255.1 Glycine max Dof5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541731.20.0dof zinc finger protein DOF1.4
RefseqXP_028191768.10.0dof zinc finger protein DOF1.4-like
TrEMBLA0A445I9540.0A0A445I954_GLYSO; Dof zinc finger protein DOF1.4 isoform A
TrEMBLI1M2200.0I1M220_SOYBN; Uncharacterized protein
STRINGGLYMA13G31100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45223356
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-36Dof family protein