PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G229600.1.p
Common NameGLYMA_13G229600, LOC100815241
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 313aa    MW: 35359.2 Da    PI: 4.7885
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G229600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-1425116187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W+++   +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ +  + + ss++p++++l
  Glyma.13G229600.1.p  25 CWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSASNGTLSSSWPFYERL 114
                          7****************************************99999*************************99999889999*******9 PP

             trihelix  86 ea 87 
                          +a
  Glyma.13G229600.1.p 115 DA 116
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2523117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPDFHDSLLT TTPPPSRPVP VREDCWSEEA SSTLVDAWGR RYLELNRGNL RQKDWQDVAD  60
AVNALHGHTK KTHRTDVQCK NRIDTIKKKY KIEKARVSAS NGTLSSSWPF YERLDALIGP  120
NFSAKKSTSS PSPSPPVALP LLPHRKNQNQ NQNPSSSPAI AVPPTAVALP QKRSSAAAMD  180
EGYFRRNYSA VAAAAAAAEA DEDDEEEDEE EAEDLEEEEE EECEEEGRGS EVEEGDKERE  240
GMRRLAKAIE RFGEVYERVE AQKLRQMVDL EKQRMQFAKD LEVQRMEMFM DTQVQLERIK  300
RGKRSGSNDM YS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.96410.0pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G229600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-146AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542983.10.0trihelix transcription factor ASIL2
RefseqXP_028189803.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A445I8U60.0A0A445I8U6_GLYSO; Trihelix transcription factor ASIL2
TrEMBLI1M1T80.0I1M1T8_SOYBN; Uncharacterized protein
STRINGGLYMA13G30280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-39sequence-specific DNA binding transcription factors