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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.13G219900.2.p |
Common Name | GLYMA_13G219900, LOC100787772 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
TCP |
Protein Properties |
Length: 533aa MW: 58367.2 Da PI: 7.8313 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.13G219900.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 115.6 | 6.4e-36 | 75 | 239 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssss 69
g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai el+++ +
Glyma.13G219900.2.p 75 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLnnpfpdtpkqlsdkkrptsgggQ--- 161
689*************************************************************88887666655443222222220... PP
TCP 70 aseceaesssssasnsssg.................kaaksaakskksqksaasalnlak....esrakararare.rtrekmriknk 135
++++ +++ + + +++a+s+ s++s+ s l+l++ r kar+rare +ek + k+k
Glyma.13G219900.2.p 162 -----QQQQIQQG-----HfddadgdtsypqnqsqnLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARErAAKEKEKEKEK 239
.....22222222.....0223334444444444445566666677777777777777765333556999999999444455444443 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MEEDEIQACK FPRVGNGRSS DQYQEEEEEG GDLRLRKGVG VGGGGGGGGS DASTNHFHQS 60 SWHHSSRIIR VSRASGGKDR HSKVMTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA 120 VEWLIKAASE AISELPSLNN PFPDTPKQLS DKKRPTSGGG QQQQQIQQGH FDDADGDTSY 180 PQNQSQNLSL SKSACSSTSE TSKGSGLSLS RSEIRVNRVK ARERARERAA KEKEKEKEKE 240 KEKEKESESS IAHHHHHHHV NNNNHMSHTA SFTELLTGGI GSTVTVNPNT TTTTTTTTTS 300 PNGSSVHQIH DGHDHETNLF NKGRQQQQQH HWSQTVTPMD YFSTGLLVGP SSSSARTQQH 360 QHQSSSAHFQ LGHAHALPIS PFSGENHSEQ LQHFSFMPDH LNNIPAHHVV TSSSASHQPN 420 GGDNNYNLNF SISTSTGLAG YNNRGTLQSN SPSSSFLPHH LQRFQPLDGS SNLPFFIGAA 480 APSSAPPTMD NNNNNNSNNH HHLQFSPVFD GRLQLCYGDG TRHSDHKGKG KN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB076992 | 1e-154 | AB076992.1 Pueraria montana var. lobata PlCYC4 gene, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G18390.2 | 5e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |