PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G217000.2.p
Common NameGLYMA_13G217000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 372aa    MW: 39634.6 Da    PI: 8.1186
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G217000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-125176227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C +G+rC+F+H++
  Glyma.13G217000.2.p 51 DEVDCTYYLRTGFCGFGSRCRFNHPR 76
                         6789********************96 PP
2zf-CCCH35.81.4e-1197121327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rt tCk+G++Ck++H++
  Glyma.13G217000.2.p  97 QPVCQYFMRTRTCKFGSSCKYHHPR 121
                          689********************96 PP
3zf-CCCH36.48.9e-12145169226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+++ +tG+Ck+G++CkF+H+
  Glyma.13G217000.2.p 145 GEKECSYYVKTGQCKFGATCKFHHP 169
                          6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6524977IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-65177IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-95176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-494121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84994122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-695121IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-997121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-499121IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6145170IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4149168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEQYGRSSEG SRSDPSPEWA EPEAQTGLEE PVWQLGMGGG AGEESYPQRP DEVDCTYYLR  60
TGFCGFGSRC RFNHPRDRAV VAGAERTAGE HPERVGQPVC QYFMRTRTCK FGSSCKYHHP  120
RQAGAGGAAA TPVSLNYYGY PLRQGEKECS YYVKTGQCKF GATCKFHHPV PAGIQIPPSP  180
FAPVSPLPVP VPSPLYSTMQ PPPGPSSQQI GVLVARPPML PGSLVQSPYG PVVLSPAMVP  240
ISGWGPYQAS ASGAVLPSGT PSNVGSAQLY GITQLPSPAA AYPGPYPPSG SPVGPPSSSQ  300
KEQAFPERSN QPEYQYYLKT GEVKFGPSYR YNPPPDMSVP DMSTPKANVI LSPAGLPLRP  360
GLKLKSVDES N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G217000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-125AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541660.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-120C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLK7M1270.0K7M127_SOYBN; Uncharacterized protein
STRINGGLYMA13G28820.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-116C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]