PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G207500.2.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 244aa    MW: 27208.9 Da    PI: 7.2708
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G207500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC131.23.3e-4161161198
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql +fw+k+   ie++t fk h+lPlarikki+k +e v+m+saea v+++kace+f++elt+r+   aeen+r+ +kk+d+a+a++rtd
  Glyma.13G207500.2.p  61 QLTNFWAKKrqeIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTD 150
                          799***9877789***************************************************************************** PP

                NF-YC  88 ifdflvdivpr 98 
                          +fdflvdiv  
  Glyma.13G207500.2.p 151 VFDFLVDIVSG 161
                          ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.42E-2667155IPR009072Histone-fold
PfamPF008081.0E-1683146IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.5E-2884160IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDQNQHDRLA QEAQYQSNPM MAPTILPTQT YGHSLSSSYP RLHPYDPQAM YQLRQEPLQQ  60
QLTNFWAKKR QEIEETTSFK THSLPLARIK KIMKGEEGVR MVSAEASVVF AKACEMFMME  120
LTIRASGSAE ENQRKIIKKC DVASAISRTD VFDFLVDIVS GHNKIMEQQG FVGIPRIGTA  180
LTPTENVPYY QMPPHQSLVP GPPYGSSGMV VGMPVHYQNH PGLQTPTMGP TPNPQNSSRD  240
SDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-4071159593NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G207500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621214.10.0nuclear transcription factor Y subunit C-3
RefseqXP_028187172.10.0nuclear transcription factor Y subunit C-3-like
TrEMBLA0A445I7Q60.0A0A445I7Q6_GLYSO; Nuclear transcription factor Y subunit C-3
TrEMBLI1M1330.0I1M133_SOYBN; Uncharacterized protein
STRINGGLYMA13G27770.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-49nuclear factor Y, subunit C3