PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G204400.1.p
Common NameGLYMA_13G204400, LOC100795896
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 439aa    MW: 48344.4 Da    PI: 8.6106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G204400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13372417655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L++l Pk+    +k  s a++L +AveYIk+Lq
  Glyma.13G204400.1.p 372 SIAERERRTRISARIKKLQDLFPKS----DKQTSTADMLDLAVEYIKDLQ 417
                          689*********************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14369429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-11370421No hitNo description
Gene3DG3DSA:4.10.280.101.0E-13371427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10372417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSIVYSHAVK YSRGETRMNP EMDSNIGQHC HQQNSGLMRY RSAPSSLLTS LVNNNNNNNG  60
YVNGESFRSE HNHHHHQQQQ QQHYPPSTSS EMENMLAKLI SSNNSEPLQM KEEAGDSVSQ  120
PPQQHNGYSY GSSPQMMYQT QQIQGLPIPN GSLGASGSAF DGSFSAVNSL ASQNSTQPKM  180
GASTNCNNLI RQKSSPAGFF SNYSVDNAAL RDVASFRGCD VSNGQAITSS SGLHGTLNFS  240
SRPSSCSTRM PQIAENGNED VEANCVESRN LRNDNINNTK CYMPSFTTDF WDGSAFSASR  300
TASNSGEISF STSKAMDIQD EDFGYQKVGL THHLSLPGSS SRMATMEKLY QIQGSVPCKI  360
RAKRGFATHP RSIAERERRT RISARIKKLQ DLFPKSDKQT STADMLDLAV EYIKDLQKQV  420
KILRDTRAKC TCTSNQKH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50830.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G204400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991790.0BT099179.1 Soybean clone JCVI-FLGm-26J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542860.10.0transcription factor bHLH130 isoform X1
RefseqXP_006594419.10.0transcription factor bHLH130 isoform X1
TrEMBLA0A0R0H3120.0A0A0R0H312_SOYBN; Uncharacterized protein
STRINGGLYMA13G27455.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-48bHLH family protein