PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G197800.1.p
Common NameGLYMA_13G197800, LOC100787956
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 452aa    MW: 51349.8 Da    PI: 5.0296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G197800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-08381434146
                          TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 
                          r+ WT+eE++ l+++v ++ ++     W++I +       ++Rt+ ++k++w +
  Glyma.13G197800.1.p 381 RLLWTAEEEKVLKEGVSKFSTEnqniPWRKILEFGCrvfdETRTPVDLKDKWKN 434
                          677****************************9987799**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-7890IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.6E-53490IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154892.51E-53686No hitNo description
SMARTSM002497.6E-43687IPR001965Zinc finger, PHD-type
PROSITE patternPS0135903786IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.1E-10374443IPR009057Homeodomain-like
PROSITE profilePS5129410.579376440IPR017930Myb domain
SuperFamilySSF466894.34E-10379437IPR009057Homeodomain-like
SMARTSM007171.1E-5380438IPR001005SANT/Myb domain
PfamPF002491.4E-5383434IPR001005SANT/Myb domain
CDDcd116601.49E-11384436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MRRKSRGKRR RAASATTLSP SSLSAIPILW DAYDTICIHC NNKGEEAKED GLLICSGRGC  60
PVAVHATCLA TGPKFDGSGN FCCPYCWYKR AVDTCRRLRE KALEAKGDLS RFLDNHDHAR  120
AAAHVDLVVQ DSEELMEETG TQAQSKDNKD EEGEARVNQV HDREETETEP EGNKEKEGKV  180
RDNEELVEER ERKTVTEAQS QENKAEEDKF QDDSEELVVE TETETEVQCE ENKEEGKVRD  240
SEEHVEEMET ETGAEAQPEE KKDEGKVRDS EKLVEETQTE TEGQSEEKKD EEGKVAVMSS  300
SVSETYDSDS VAVSMKKRKD KKKKVTSARK SLSLQQEHKN KHYKTRGKVA NEEEVTSFKT  360
TSLGQQPQRM KQSSLAAKRK RLLWTAEEEK VLKEGVSKFS TENQNIPWRK ILEFGCRVFD  420
ETRTPVDLKD KWKNIISKKS RSTDCSYTFD L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316323KRKDKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G197800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-45AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594392.10.0troponin T, cardiac muscle
RefseqXP_006594393.10.0troponin T, cardiac muscle
RefseqXP_028190924.10.0troponin T, cardiac muscle-like
RefseqXP_028190925.10.0troponin T, cardiac muscle-like
TrEMBLA0A445I7A90.0A0A445I7A9_GLYSO; Uncharacterized protein
TrEMBLK7M0R70.0K7M0R7_SOYBN; Uncharacterized protein
STRINGGLYMA13G26790.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Representative plantOGRP1443713