PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G195800.1.p
Common NameGLYMA_13G195800, LOC100784245
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 327aa    MW: 36576.1 Da    PI: 8.986
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G195800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.84.3e-1649134186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  v +L+ea++ ++   +r+klk+++We+v++++      ++  ++++qCk+k e+++kry+ + +++       ss++p++++l+
  Glyma.13G195800.1.p  49 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTSTQCKNKVESMKKRYRSESATADHA----SSSWPLYSRLD 134
                          5*************************************85545555566678*******************9974....778*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-2047134No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGVDDEQEME EEEEEEREEE KKKHKQAPPS LFPISVRKGF SGERVKRDEW SEGAVSTLLE  60
AYEAKWVLRN RAKLKGHDWE DVARHVSSRA NCTKSPKTST QCKNKVESMK KRYRSESATA  120
DHASSSWPLY SRLDLLLRGT GPVFSSPPGP LMVAAPMPPL SPVEPSQPLA PSGPLANAQN  180
SHGSNGVDEK LAKEDGLGTK SSDQVSSKNP LDTDSSTPAL YSQKEELRSN KRKKKTIDHN  240
TGRRRKEYVE IAESLRWLAE AMIRSEQARM DTMKEIERMR VEAEAKRGEM DLKRTEIIAN  300
TQLEIARIFA SVNSKGVDSS LRIGRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245RKKKTIDHNTGRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.240360.0root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G195800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1604550.0AC160455.26 Glycine max cultivar Williams 82 clone gmw2-10n21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541588.10.0trihelix transcription factor ASIL1
TrEMBLI1M0R00.0I1M0R0_SOYBN; Uncharacterized protein
STRINGGLYMA13G26550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-105sequence-specific DNA binding transcription factors