PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 470aa MW: 51990 Da PI: 6.3642

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G193700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.1e-09	182	224	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L Glyma.13G193700.2.p 182 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 224 568899************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.8E-8	174	227	No hit	No description
Pfam	PF07716	6.8E-7	180	226	IPR004827	Basic-leucine zipper domain
SMART	SM00338	8.7E-8	180	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	182	226	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.28E-23	184	236	No hit	No description
SuperFamily	SSF57959	7.5E-7	184	227	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-33	266	341	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MGSRTTWRVV GVEDDKGAER GMPSFNSELP NSNSCYTEGN TIDSFRVSDF GAFDQSYHIE 60 DAVDLSGNPV YNSLKVNSQT ISPGSVHISS LGQLPISLEK SPLTNQTEPP HRLRLQKVQS 120 SNPGTILVGN TDNWEESTMA DASPRTDIST DGDTDDKNHP FDRNQALTAV SDSSDRSKDK 180 SDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ GIFISSSGDQ 240 AHTLSGNGAM QFDAEYARWL EEQNRQINEL RAAVNSHASD TELRMIVDGI LAHYDEIFRL 300 KGVAAKADVF HLLSGMWKTP AERCFLWLGG FRSSELLKLL VSQLEPLTEQ QLMGITNLQQ 360 SSQQAEDALS QGMEALQQSL AETLSTGAPA SSGSSGNVAS YMGQMAMAMG KLGTLEGFIQ 420 QADNLRQQTL QQMHRILTTR QSARALLAIH DYISRLRALS SLWLARPRD*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MGSRTTWRVV GVEDDKGAER GMPSFNSELP NSNSCYTEGN TIDSFRVSDF GAFDQSYHIE  60
DAVDLSGNPV YNSLKVNSQT ISPGSVHISS LGQLPISLEK SPLTNQTEPP HRLRLQKVQS  120
SNPGTILVGN TDNWEESTMA DASPRTDIST DGDTDDKNHP FDRNQALTAV SDSSDRSKDK  180
SDQKTLRRLA QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQELQRARQQ GIFISSSGDQ  240
AHTLSGNGAM QFDAEYARWL EEQNRQINEL RAAVNSHASD TELRMIVDGI LAHYDEIFRL  300
KGVAAKADVF HLLSGMWKTP AERCFLWLGG FRSSELLKLL VSQLEPLTEQ QLMGITNLQQ  360
SSQQAEDALS QGMEALQQSL AETLSTGAPA SSGSSGNVAS YMGQMAMAMG KLGTLEGFIQ  420
QADNLRQQTL QQMHRILTTR QSARALLAIH DYISRLRALS SLWLARPRD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.3727	0.0	hypocotyl\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G193700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096311	0.0	BT096311.1 Soybean clone JCVI-FLGm-25J1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237963.2	0.0	bZIP transcription factor bZIP99
Refseq	XP_028189404.1	0.0	transcription factor TGA6-like isoform X3
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0R0GZ65	0.0	A0A0R0GZ65_SOYBN; Uncharacterized protein
TrEMBL	A0A445I727	0.0	A0A445I727_GLYSO; Transcription factor TGAL1 isoform A
STRING	GLYMA13G26280.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-154	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Glyma.13G193700.2.p
Entrez Gene	778190

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liao Y, et al. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta, 2008. 228(2): p. 225-40 [PMID:18365246] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]