PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G182700.1.p
Common NameGLYMA_13G182700, LOC100791855
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 337aa    MW: 37108.3 Da    PI: 8.5636
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G182700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.81.5e-3548106361
               zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          +++lkcprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ +
  Glyma.13G182700.1.p  48 SESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVR 106
                          5789***********************************************98776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2346104IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3150103IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.46551105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGLSSKQVSS SGLDWKQTLL EAQNLELPKP NLMRKQQQQQ QQQTQPNSES LKCPRCDSTN  60
TKFCYYNNYN KSQPRHFCRA CKRHWTKGGT LRNVPVGGGR KNKRVRKSIT TPITTSSTTT  120
SITTTTSTCT ATVTTSIGNN NNNMDAMLGC NSHMTIQTPL ADDHKNMSSS LYQALIRPPP  180
LLLQQQNLMN NTRDLEGKDF GIGIGNGNNG IFPSLTLPFP IHHQSQSLLF PFSTSSSSFD  240
TNPCSVVSTS LRSSNVYNYG EDQFKAIEEP TINSTITTTT IVPSTNNTHH PWEIAAATSG  300
VGLGTSSNSN YWNWEDFDSL VSTDLKDPWD GSDIKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212390.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G182700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542768.10.0dof zinc finger protein DOF4.6
TrEMBLI1M0D90.0I1M0D9_SOYBN; Uncharacterized protein
STRINGGLYMA13G25120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-29Dof family protein