PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G177500.1.p
Common NameGLYMA_13G177500, LOC778105
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 354aa    MW: 37822.5 Da    PI: 8.7939
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G177500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.7e-3952112262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +++alkcprC+s+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++
  Glyma.13G177500.1.p  52 QQQALKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 112
                          7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.2E-3354110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.39456110IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-2557110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFGGNNCEKM VAVVTPQTAS NKWTQTQQID DHKAPMMGRV MEKPSQDLLQ QQQQALKCPR  60
CESSNTKFCY YNNYSLSQPR HFCKACKRYW TRGGTLRNVP VGGGCRKNKR VKRPTNHGDS  120
SSSAANSPSS SNSNPPSQPH IDNIIASSST TNHINNISPF FYGGDVMSSV PFPRFNLHSQ  180
LNALGLGFST GVSENGFSTS NNNSFFSAYN SMFGSSSSST CAPSTPVMAS LLSSTLLQQK  240
LMSGGGGGGV KGSSDHDQGG NTFHGLAPLQ GLQVEGNNNN SNNIGTKEVR GEGQNRFDWS  300
NNNNNNNGGG GCQNQMEHVG LSDPNSLYWN TATGLGAWSD QPNNIGPSVT SLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.142470.0cotyledon| flower| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G177500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940370.0BT094037.1 Soybean clone JCVI-FLGm-14M14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541529.20.0dof zinc finger protein DOF1.4
TrEMBLI1M0870.0I1M087_SOYBN; Uncharacterized protein
STRINGGLYMA13G24600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45223356
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.21e-34Dof family protein