PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G149900.1.p
Common NameGLYMA_13G149900, LOC100805459
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 488aa    MW: 53195.5 Da    PI: 6.3277
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G149900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix621.4e-19108194186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L+ea++e+ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle
  Glyma.13G149900.1.p 108 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMSSG-CISTSHWPWFKQLE 194
                          5*************************************666677899*************************9.99999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-20106196No hitNo description
Gene3DG3DSA:3.40.1160.108.3E-69237480IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.492246481IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.96E-56247480IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.62E-104249481No hitNo description
PfamPF006962.5E-25250460IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MASCDDDDDF SLLRDDSHHH LHQPYAPHHH HFSPSAVAAS VPPKPVAEAE DFANPFEDDD  60
GSASEKRKEC DEIGEGAASY GFNNKRSKAT PSNGAVSGGA EYRKDREEWS DTAIVCLLEA  120
YTEKFTQLNR GNLRGRDWEE VAAVVSERCE NQSKSVEQCK NKVDNLKKRY KLERHRMSSG  180
CISTSHWPWF KQLEQIVGNS LPAKFSDEDK AVVSAGTTPR QSKRYGVATP STGGQANSMK  240
SKAFSNRWRR VVFKISGAAL TGSDTCNIDP KVAMLVSREV SIASHLGVEV AIVVGGRNFF  300
SGDAWVNATG LERCTAYQVG MMATVMNSIL LQSTLEKMGV QTRVQTSVAM QEFAEPYNRQ  360
RAIRHLEKGR VVIFGGIGFG AGTPLFSTDI AAALRASELN AEAVLKGTNV DGVYDCNSRD  420
NNFTFEHISF RELGSRGVTS MDMSALTFCE ENAIPVVVFN LLEPGNISKA LCGEQVGTLI  480
DQTGAIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-5923048036279Uridylate kinase
3nwy_B2e-5923048036279Uridylate kinase
3nwy_C2e-5923048036279Uridylate kinase
3nwy_D2e-5923048036279Uridylate kinase
3nwy_E2e-5923048036279Uridylate kinase
3nwy_F2e-5923048036279Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.385150.0flower| meristem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G149900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-156AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594184.10.0uncharacterized protein LOC100805459
RefseqXP_028195590.10.0uncharacterized protein LOC114380752
TrEMBLA0A445HGB30.0A0A445HGB3_GLYSO; Uridylate kinase isoform A
TrEMBLK7LZV40.0K7LZV4_SOYBN; Uncharacterized protein
STRINGGLYMA13G21371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein