PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G130100.3.p
Common NameGLYMA_13G130100, LOC100788491
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 510aa    MW: 56361.9 Da    PI: 5.9854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G130100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16300346455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Glyma.13G130100.3.p 300 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 346
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-17299350No hitNo description
SuperFamilySSF474596.8E-21299374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13300346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-21300355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNHCVPDFET QMDDDLEFSI PVSKKPSTQN DEIMELLWQN GQVVMQSQNQ RPFRKPPQPP  60
EANGGDGAIS AREIRSSEAE NYNNSQHLFM QEDEMAAWLH YPIHEDPPPF DHHDFGADIF  120
YPPPNATASQ NRGSAAVQSS FRTTELWHPA PRPPIPPPRR PEHAPSRIHN FAHFTKHGNA  180
SSSSKAAAAA QPTVVDSCET PVATAEHAET GRARAAAGKT AVSDGGRETA TCDVTVTSSP  240
GDSSGSAEPV EREPMADRKR KGREHEESEF QSEDVDFESP EAKKQVHGST STKRSRAAEV  300
HNLSERRRRD RINEKMKALQ ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGYGMVP  360
MMFPGIQQYM PPMGMGIGMG MGMEMGMGMN RPVMPFTNML ASSTLPAATA AVHLGPRFPM  420
PPFHMPHVAA PDSSRMQGAN HPDNNMLNSL GTLDPDQSRI PNFTDPYQQY LGLQQAQLQL  480
MQTMNQQNVS KPSSSRGQEN PEKHQSDET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.230090.0cotyledon| hypocotyl| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G130100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311140.0KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594070.10.0transcription factor PIF1 isoform X1
RefseqXP_028197344.10.0transcription factor PIF1-like isoform X1
TrEMBLA0A445HF400.0A0A445HF40_GLYSO; Transcription factor PIF1 isoform A
TrEMBLK7LZG00.0K7LZG0_SOYBN; Uncharacterized protein
STRINGGLYMA13G19250.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.36e-51phytochrome interacting factor 3-like 5