PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G120700.1.p
Common NameGLYMA_13G120700, LOC100782107
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 507aa    MW: 55276.5 Da    PI: 5.5408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G120700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11357403455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Glyma.13G120700.1.p 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 403
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-4551227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-17356423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-13356407No hitNo description
Gene3DG3DSA:4.10.280.102.2E-17357423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.80E-4437504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MMGEKFCVNE EDKGVLESVL GAEAVAFFIS ALSNNVFSGV VAPSASTDPG LRQRLCQLVE  60
GSKWNYAVFW QVAVLKSGGS ALVWGDGHCS DPKGERNGVG KEDEQEVRKN VLQKLDACFG  120
GSVSKEANYA RLDRVSDLLM FYLSSMCYIF GFDSPCGPGS SFKSGKLIWA SDAAGCLNQL  180
ESRSFMGKLA GLQTVVFVPL KSGVVELGSL EMVPEEHGVV EMVRTAFGES SPGQAKVFPK  240
IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSYEVQAL GVNHAYGNSS NGTLGVSNEG  300
KMFPQLNQMM AGNFNAQGSG VPCLDLGNED SSSIHADERK PRKRGRKPAN GREEPLNHVE  360
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITFIT DLQMKIKVLE AEKNMIHNQD  420
QKLSLPDMDF QEREDETVVT VRCPLDIHPV SNVVKTFKEH QIVAQDSSVS TTDDKIIHTF  480
SIRTEGGETA AIQLKEKLEA SLSKNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-30351425276Transcription factor MYC2
5gnj_B9e-30351425276Transcription factor MYC2
5gnj_E9e-30351425276Transcription factor MYC2
5gnj_F9e-30351425276Transcription factor MYC2
5gnj_G9e-30351425276Transcription factor MYC2
5gnj_I9e-30351425276Transcription factor MYC2
5gnj_M9e-30351425276Transcription factor MYC2
5gnj_N9e-30351425276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338346RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610390.0flower| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G120700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
GenBankAP0156800.0AP015680.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0636, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594010.10.0transcription factor bHLH3
RefseqXP_028197614.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-178MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A445HEL70.0A0A445HEL7_GLYSO; Transcription factor bHLH3
TrEMBLK7LZ930.0K7LZ93_SOYBN; Uncharacterized protein
STRINGGLYMA13G18131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-157bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]