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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G081700.1.p |
| Common Name | GLYMA_13G081700, LOC100816317 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
GRAS |
| Protein Properties |
Length: 473aa MW: 51427.4 Da PI: 4.8619 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G081700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 321.3 | 2e-98 | 96 | 468 | 1 | 373 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87
l +lL+++Aea+ss +++ la+a+L rl+el+sp++ ++++Rlaa+f AL++ l++ + ++ t+ +++l+a++l++++
Glyma.13G081700.1.p 96 LLHLLMAAAEALSSgtESHDLARAILVRLNELVSPTQgTNIERLAAHFSHALHSLLNG-------TASAH-TP---PIDTLTAFQLLQDM 174
579**********9445666************8886659*******************.......22222.22...6899********** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...........skeeleetgerLa 166
sP++kf+h+taNqaIleav++e+rvHiiD+di++G+QW++L+qaL+s + p+lRiT++++ g s+ +++etg+rL+
Glyma.13G081700.1.p 175 SPYIKFAHFTANQAILEAVAHEKRVHIIDYDITEGAQWASLIQALSSAGPPGPHLRITALSRGGGGggnsssasgqrSTASVQETGRRLT 264
***********************************************999999*******99554477788899999999********** PP
GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFl 254
fA+++g pf+f+ + e++++++L++ +gEal+ n++l+l +l + ++L+ k+l++++vv+ve+e+ + ++ F+
Glyma.13G081700.1.p 265 AFAASVGQPFSFHHSRLDPDETFRPSNLKLVRGEALVFNCMLHLPHLN---FRASGSVGSFLRGAKELNSRLVVLVEEEMGCvaADSGFV 351
*************9888899************************9996...333334557*******************99877899*** PP
GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
f+++l++ysa+fdsle+++p ++ +r+ vE+++lg++i+ va + +e++ +W e+l++aGF+ vpls + +qa+lll +
Glyma.13G081700.1.p 352 GFFMDSLHHYSAVFDSLEVGFPMQTWARALVEKVFLGPRITGSVARMYGS--GTEEEKVSWGEWLGAAGFRGVPLSFANHCQANLLLGLF 439
**********************************************9998..5667779******************************* PP
GRAS 345 ksdgyrveee.sgslvlgWkdrpLvsvSaW 373
+ dgyrvee ++ lvlgWk+r+L+s+S+W
Glyma.13G081700.1.p 440 N-DGYRVEELeNNRLVLGWKSRRLLSASVW 468
*.******86488999************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MDMLIMDDPD FLDFSDHSIT TTLSSHEDCN KNNNNLWSPL IDWESLNACE NDFQTLIDSV 60
MIDNNDDVLT PEESDQSAAE ESESDSTGGD ERGLRLLHLL MAAAEALSSG TESHDLARAI 120
LVRLNELVSP TQGTNIERLA AHFSHALHSL LNGTASAHTP PIDTLTAFQL LQDMSPYIKF 180
AHFTANQAIL EAVAHEKRVH IIDYDITEGA QWASLIQALS SAGPPGPHLR ITALSRGGGG 240
GGNSSSASGQ RSTASVQETG RRLTAFAASV GQPFSFHHSR LDPDETFRPS NLKLVRGEAL 300
VFNCMLHLPH LNFRASGSVG SFLRGAKELN SRLVVLVEEE MGCVAADSGF VGFFMDSLHH 360
YSAVFDSLEV GFPMQTWARA LVEKVFLGPR ITGSVARMYG SGTEEEKVSW GEWLGAAGFR 420
GVPLSFANHC QANLLLGLFN DGYRVEELEN NRLVLGWKSR RLLSASVWSS NS*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 1e-55 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
