PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G073400.2.p
Common NameGLYMA_13G073400, LOC100800658
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 525aa    MW: 57939.3 Da    PI: 5.2155
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G073400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-184087148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Glyma.13G073400.2.p 40 KGPWTAAEDAILVEYVKKHGQGNWNAVQKHSGLARCGKSCRLRWANHL 87
                         79******************************************9986 PP
2Myb_DNA-binding50.93.6e-1693136146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++
  Glyma.13G073400.2.p  93 KGAFTAEEENRILELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 136
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0823587IPR017930Myb domain
SuperFamilySSF466893.07E-3038134IPR009057Homeodomain-like
SMARTSM007175.1E-153989IPR001005SANT/Myb domain
PfamPF002494.2E-164087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-244194IPR009057Homeodomain-like
CDDcd001672.93E-124287No hitNo description
PROSITE profilePS5129424.70988142IPR017930Myb domain
SMARTSM007176.4E-1692140IPR001005SANT/Myb domain
PfamPF002495.1E-1593136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2595140IPR009057Homeodomain-like
CDDcd001671.24E-1195136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSSMTSGGDT RKISKGRWSS SLDEKVGVGG NVGGEGPLKK GPWTAAEDAI LVEYVKKHGQ  60
GNWNAVQKHS GLARCGKSCR LRWANHLRPD LKKGAFTAEE ENRILELHAK MGNKWARMAA  120
ELPGRTDNEI KNYWNTRIKR MQRAGLPIYP EELCQRILNG NQESQNVGTM TNEACHHDDL  180
SQTNNFDIPD VEFKNFKFRH GLPHVPSIFD MPESSLFDQS SDSSHSYNFL FPTMRPTKRP  240
RESEMLYDSF GSCSINAAPL FDQYGNYTFE KISDHPGLSL PCDPVLNTTD QFHGDNLTGS  300
HAALNGNASA SVPIFGAMKL ELPSLQYPET QHGSWGPPMS PLPSLESVDT LIQSPTLEPI  360
LSDPISPQSS GLLEAIVYNS KSLKGSNNDL LLQETIATAN EVANISTLNH SFQTEWDELG  420
DPNSPLGQSA ASVLTDYTPV RMCSVDGYQS TETSQDHDDK HEAPTTQFPD SSSKKKILKQ  480
VDYTQPDALL DLGWFGNNTK YESDQFVQQD ALGALFGDNC QHQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31381405106B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.302660.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G073400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543825.20.0transcription factor GAMYB isoform X1
RefseqXP_006593626.10.0transcription factor GAMYB isoform X2
RefseqXP_006593627.10.0transcription factor GAMYB isoform X2
RefseqXP_014620817.10.0transcription factor GAMYB isoform X2
TrEMBLA0A0R0GJT20.0A0A0R0GJT2_SOYBN; Uncharacterized protein
TrEMBLK7LXA10.0K7LXA1_SOYBN; Uncharacterized protein
STRINGGLYMA13G04031.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.36e-93myb domain protein 33