PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G047400.1.p
Common NameGLYMA_13G047400, LOC100801549
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 420aa    MW: 46564.1 Da    PI: 9.5194
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G047400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.96.7e-461022732135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaess 78 
                          ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++            s+ss+s+c +  + 
  Glyma.13G047400.1.p 102 PPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSkhsnnnsdegakSFSSSSDCeDGCEV 191
                          78**************************************************************99999999999888888889533344 PP

                  TCP  79 sssasnsssg.............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                          +s+ ++++++                              aak+ +k k+    +++  +++kesr+karararert++k  + n+
  Glyma.13G047400.1.p 192 VSEIKHKQQQlitcdaaattphnlqqgldsgdnkspttlMAAKERMKLKR----TQKEPAKMKESREKARARARERTSNKIIMCNV 273
                          444444444477799999999999999****9876544333333333333....333456899****************9766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136935.921104162IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-45104268IPR005333Transcription factor, TCP
PROSITE profilePS5137011.607250267IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MFPYSSNPSP SFPSSSSSYP PFPFLNLENA SASNTLLHDA LSVPYIPTHH NPSSIQEALN  60
NFPVTDHNCG GGGGSGSAMT KPDPNGGGAP QYGISCFLTK KPPKKDRHSK IYTSQGLRDR  120
RVRLSIEIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS  180
SSSDCEDGCE VVSEIKHKQQ QLITCDAAAT TPHNLQQGLD SGDNKSPTTL MAAKERMKLK  240
RTQKEPAKMK ESREKARARA RERTSNKIIM CNVNTNNTGG KVLQDLKKKC PAIENNHTQI  300
MHQSRSSPTH HPHHLVGNET PRDDFNVIEE SIVIKRKLKP SLMSSSDHHH HHHQNLVMPK  360
EPPSFNNNNS EYHPFSNLSP NWDANGSTGR SNFCAIASMN LSTGLQIFGK SWEECINPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G047400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541273.10.0transcription factor CYCLOIDEA
RefseqXP_006593723.10.0transcription factor CYCLOIDEA
RefseqXP_014620978.10.0transcription factor CYCLOIDEA
RefseqXP_028197082.10.0transcription factor CYCLOIDEA-like
RefseqXP_028197083.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A445HB770.0A0A445HB77_GLYSO; Transcription factor TCP1
TrEMBLK7LXS70.0K7LXS7_SOYBN; Uncharacterized protein
STRINGGLYMA13G07475.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-29TCP family protein
Publications ? help Back to Top
  1. Wang S, et al.
    A Rare SNP Identified a TCP Transcription Factor Essential for Tendril Development in Cucumber.
    Mol Plant, 2015. 8(12): p. 1795-808
    [PMID:26597500]