PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G238700.1.p
Common NameGLYMA_12G238700, LOC100797629
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 435aa    MW: 47713.9 Da    PI: 9.3051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G238700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12368413655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L++l Pk     +k  s a++L +AveYIk+Lq
  Glyma.12G238700.1.p 368 SIAERERRTRISARIKKLQDLFPKT----DKQTSTADMLDLAVEYIKDLQ 413
                          689*********************8....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.132362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14365425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-11366417No hitNo description
Gene3DG3DSA:4.10.280.103.9E-14367423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9368413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSIVYSHAVK YSQGETRMNP EMDSNIGQHC HQQNSGLMRY RSAPSSLLTS LANNNNINNN  60
TTTNGCVNGK AFRSVHNHHQ QQRYPPSTSS EMETMLAKLI SSNNSEPLQV KEEAVASVSQ  120
PPQQHNGYSY GSSPQMMYQT QQIQGLPMPN GSLGNAFDGS FSAVNSLASQ NSTQPRLGAS  180
TNCNNLIRQK SSPAGFFSNY SVDNAMRDVA SFRGCDVSNG QAITSSSGLH GGTLNLSSRP  240
SSCSTRMPQI AENGNEGVEG NYVESRNLRN DNINSTKCYM PSFTTDFWDG SSFSPRTASN  300
NGEISFSTSN AMDIQGEDFG YQKVGLTHHS SLPGSSSRVA TMEKFYQIQG SVPCKIRAKR  360
GFATHPRSIA ERERRTRISA RIKKLQDLFP KTDKQTSTAD MLDLAVEYIK DLQKQVKMLR  420
DTRAKCTCTS NQKH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.403190.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G238700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991790.0BT099179.1 Soybean clone JCVI-FLGm-26J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539646.10.0transcription factor bHLH130
RefseqXP_028192742.10.0transcription factor bHLH130-like
RefseqXP_028192743.10.0transcription factor bHLH130-like
TrEMBLA0A0B2QGT80.0A0A0B2QGT8_GLYSO; Transcription factor bHLH130
TrEMBLI1LVE90.0I1LVE9_SOYBN; Uncharacterized protein
STRINGGLYMA12G36750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-51bHLH family protein