PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G216800.1.p | ||||||||
Common Name | GLYMA_12G216800, LOC100796549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 457aa MW: 50255.3 Da PI: 6.7332 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.6e-06 | 347 | 385 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Glyma.12G216800.1.p 347 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 385 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.576 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.31E-7 | 346 | 389 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-11 | 346 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0025 | 347 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-10 | 350 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MADDDQFQAS GNWWETSRSV RYESGASQSS SSAITNTGNN FGWQGSDMAD MKPRSSMDSS 60 SVVFHDTQNN KLQQPDSATS SDPNLHMMGL GLSSQAMDWN RASLLRGEKG TENSFRSMLQ 120 ENLSSSRTNF QHETGNMELS QQVQWRSEKI FSSESSTNEF KQVNRGGGFS LDQSQFSPQY 180 SSGDSTVTSQ GLPSSNFQID SSALYGTSSI LQGLLGPDHN NQTQQQPMSF PYHTTSYGLN 240 SNELVPSWSK VPQFLRASPP KPPPNNQLHF TNPATFWNAS EAANIKDVRP SFFPSLQPPF 300 STPNFEVQSK NISEVRESGT VVKKSGNEPA PKRTRNETPS PLPAFKVRKE KMGDRITALQ 360 QLVSPFGKTD TASVLSEAIE YIKFLHEQVT ALSTPYMKSG APIQIQQNSG KSKEAEGPKQ 420 DLRSRGLCLV PVSSTFPVTH ETTVDFWTPT FGGTPR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28110 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G216800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-178 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592891.1 | 0.0 | transcription factor bHLH123 isoform X1 | ||||
Refseq | XP_028192315.1 | 0.0 | transcription factor bHLH123-like isoform X1 | ||||
Swissprot | Q8GXT3 | 7e-87 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A445HTJ6 | 0.0 | A0A445HTJ6_GLYSO; Transcription factor bHLH123 isoform A | ||||
TrEMBL | I1LUT6 | 0.0 | I1LUT6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G34490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1118 | 33 | 106 | Representative plant | OGRP3135 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 9e-79 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G216800.1.p |
Entrez Gene | 100796549 |
Publications ? help Back to Top | |||
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