PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G216100.1.p | ||||||||
Common Name | GLYMA_12G216100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 562aa MW: 62597.5 Da PI: 5.3658 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 391.4 | 9.6e-120 | 200 | 559 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+a+s+++++ ++l+ r ++ +s +g+p+qRl ay++e+L ar + s++++y+al+++e + +e l++++l++e++P+ Glyma.12G216100.1.p 200 LKQLLIACAKALSENNMNDFDQLVGRAKDAVSINGEPIQRLGAYMVEGLVARTQASGNSIYHALRCKEPE---GDELLTYMQLLFEICPY 286 689******************************************************************9...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 lkf++++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + e +g+rLa + e++g+p+ef Glyma.12G216100.1.p 287 LKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGPEVVGKRLALMSEKFGIPVEF 376 ************************************************************99999999********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + v d++ e+L+++pgEal desv+++++rd +L+lv+slsPkv ++veqe+++n+++F++rf+e+l+yy a+f Glyma.12G216100.1.p 377 HG-VPVFAPDVTREMLDIRPGEALG----------SDESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIF 455 **.688899*************996..........45666677899******************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s++++lpr+s+eri+vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g++ Glyma.12G216100.1.p 456 ESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLKMAGFQQCPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAM 544 *************************************************************************9999.66********** PP GRAS 359 vlgWkdrpLvsvSaW 373 +lgWkdr+L+s+SaW Glyma.12G216100.1.p 545 LLGWKDRNLISASAW 559 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.152 | 174 | 541 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-117 | 200 | 559 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MDSQQLFSFG GVTSAGLPYM SSFPTVPSLP NSLLRSLKYD TGNSPNSPFS TYFDSDTLSA 60 LSDGQEQYSP GEILSGVSSS LETNHYMYNR SISTLDSFPL YSDRNSLLQN ASSNQKIQHA 120 LLELETALMA PDDDQVTTPN TLAERHRSWN NENHVSQHNT QAQPSYATGN RQSSEVVHVE 180 KRQKLMEEEA TLEAFPPNNL KQLLIACAKA LSENNMNDFD QLVGRAKDAV SINGEPIQRL 240 GAYMVEGLVA RTQASGNSIY HALRCKEPEG DELLTYMQLL FEICPYLKFG YMAANGAIAE 300 ACRNEDRIHI IDFQIAQGTQ WMTLLQALAA RPGGAPHVRI TGIDDPVSKY ARGDGPEVVG 360 KRLALMSEKF GIPVEFHGVP VFAPDVTREM LDIRPGEALG SDESVHVSNP RDGLLRLVRS 420 LSPKVTTLVE QESNTNTTPF FNRFIETLDY YLAIFESIDV TLPRDSKERI NVEQHCLARD 480 IVNIIACEGK ERVERHELFG KWKSRLKMAG FQQCPLSSYV NSVIRSLLRC YSEHYTLVEK 540 DGAMLLGWKD RNLISASAWH C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-60 | 207 | 559 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-60 | 207 | 559 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-60 | 207 | 559 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4464 | 0.0 | flower| leaf| root| seed coat| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G216100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098666 | 0.0 | BT098666.1 Soybean clone JCVI-FLGm-16P3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028194506.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A0R0HH94 | 0.0 | A0A0R0HH94_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G34420.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4299 | 33 | 60 | Representative plant | OGRP8948 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-165 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G216100.1.p |
Publications ? help Back to Top | |||
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