PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G210900.1.p
Common NameGLYMA_12G210900, LOC100784918
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 308aa    MW: 34347.6 Da    PI: 10.4229
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G210900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.99.6e-1729119186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                          +W+++ + +Liea  +++ +l+rg+l++ +W+ev++++       + + +r+ +qCk++++ l+k+yk +k++ ++   +s +t+p+f++
  Glyma.12G210900.1.p  29 CWSEEATFTLIEAWGQRHLELNRGNLRQRHWQEVADAVnalhghVSAKARRTDVQCKNRIDTLKKKYKIEKARVSDS-GDSATTWPFFRR 117
                          7*************************************99999999999***********************99985.778889*****9 PP

             trihelix  85 le 86 
                          l+
  Glyma.12G210900.1.p 118 LD 119
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-2627120No hitNo description
SMARTSM005950.001437128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDSIAGAPPH ADVTPPPPRP SPFPGREDCW SEEATFTLIE AWGQRHLELN RGNLRQRHWQ  60
EVADAVNALH GHVSAKARRT DVQCKNRIDT LKKKYKIEKA RVSDSGDSAT TWPFFRRLDF  120
LIGDNFPAKK PSPPPPSSAG VTRRSTPPAK SPLWPVIPVG PRSGTKKRPA QAKPASASPD  180
SVADSYFRRN FSVFAAAAAA AAAEADSENS DGSKWSSGSE KGTMKKKRGR GDWEFGYREM  240
AEALERFGEI YERVEEAKQR QMVELEKQRM QFAKDLETQR MKLFMETQVH LQKINRSKRS  300
SASDNVS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G210900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539553.10.0trihelix transcription factor ASIL1
RefseqXP_028192440.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A445HTJ80.0A0A445HTJ8_GLYSO; Trihelix transcription factor ASIL2 isoform A
TrEMBLI1LUM80.0I1LUM8_SOYBN; Uncharacterized protein
STRINGGLYMA12G33850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-72sequence-specific DNA binding transcription factors