PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G209900.1.p
Common NameGLYMA_12G209900, LOC100783322
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 250aa    MW: 27707.8 Da    PI: 8.3322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G209900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.3e-1463109354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN  +++Lr+++P a     kKl+Ka+ L ++++++k+L
  Glyma.12G209900.1.p  63 KNHSEAERRRRARINAHLDTLRSVIPGA-----KKLDKATLLGEVIRHLKDL 109
                          58*************************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.37460109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-1263109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1363111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1464115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-473111No hitNo description
Gene3DG3DSA:3.30.70.2606.2E-5148190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEMEAFAPHR ISDGFQVSCG VIGNGYGSSS SLVLDKEKGE LVEAPVKLER KGVSPERSIE  60
ALKNHSEAER RRRARINAHL DTLRSVIPGA KKLDKATLLG EVIRHLKDLK TNAAQASEGL  120
MIPKDSDEIR IEEQEGGLNG FPYSIRASLC CEYKPGLLTD IRQALDALHL MIIRAEIATL  180
GGRMKNVFVI INCKEQNVED AEYRQFLAGS VHQALRSVLD RFSVSQDMLE SRKRRRISIF  240
SSSSIGDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235RKRRR
2232236KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532770.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G209900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539550.20.0transcription factor bHLH30
RefseqXP_028193458.10.0transcription factor bHLH30-like
TrEMBLA0A445HT980.0A0A445HT98_GLYSO; Transcription factor bHLH30
TrEMBLK7LW620.0K7LW62_SOYBN; Uncharacterized protein
STRINGGLYMA12G33751.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-31bHLH family protein