PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G206900.1.p | ||||||||
Common Name | GLYMA_12G206900, LOC100791648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 31819 Da PI: 8.9718 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.9 | 2.1e-32 | 48 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Glyma.12G206900.1.p 48 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtda 135 799***********9.99*****99984443333332222333336**********.555555677******************744446 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l Glyma.12G206900.1.p 136 dgsETRWHKTGKTRPVFI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 188 555788************.999***********5444788889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-37 | 43 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.632 | 48 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-15 | 49 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MTQCSYPENN HSIIVERHKD SLIRTCPTCG HHVKCQEQAA GIHDLPGLPA GVKFDPTDQE 60 ILEHLEAKVR SDIHKLHPLI DEFIPTLEGE NGICCTHPEK LPGVSKDGLI RHFFHRPSKA 120 YTTGTRKRRK VHTDADGSET RWHKTGKTRP VFISGKLKGY KKILVLYTNY RKQRKPEKTN 180 WVMHQYHLGN NEEEKEGELV VSKVFYQTQP RQCGSLMKDS YPAKLKGEGV HEVTNHKNTG 240 YVEYYNNSFV SFDQGDQHRS STAQLVSHFP VHGGATFIP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G206900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540381.1 | 0.0 | NAC domain-containing protein 73 | ||||
Refseq | XP_028193025.1 | 0.0 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-116 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A445HT95 | 0.0 | A0A445HT95_GLYSO; NAC domain-containing protein 73 | ||||
TrEMBL | I1LUJ2 | 0.0 | I1LUJ2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G33460.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-106 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G206900.1.p |
Entrez Gene | 100791648 |
Publications ? help Back to Top | |||
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