PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G174200.1.p
Common NameGLYMA_12G174200, LOC100778675
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 327aa    MW: 36077.6 Da    PI: 8.5606
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G174200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.5e-19240273134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Glyma.12G174200.1.p 240 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 273
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.19E-14233295No hitNo description
SMARTSM004012.6E-17234284IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767234270IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14238271IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.58E-15239286No hitNo description
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16240273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSKDIANMKD SWFFDNNFNG LSDEIFDDVI NFFDFPLEDV DANGVEEDWD AQLKCLEDPR  60
FDVYSASSAG LCAETQNEKP QLGMKLSASS NGISPIKQLA KAPGPAYGKT IPHQNVTSNG  120
KDLHQFQTYT YSPVSVFESS SSSSVENSNF DRPVIPVKRA RSKRQRPSNF SPLFSIPLIV  180
NLPAVRKDQR TAASDSDFGT NVAGNLSNKV KKQRKKDLSL LSDVEMTRSS SPESGPPRKC  240
MHCEVTKTPQ WREGPMGPKT LCNACGVRYR SGRLFPEYRP AASPTFVASL HSNCHKKVVE  300
MRSRVIQEPV RCSMLASSNL HGNSVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320630.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G174200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992130.0BT099213.1 Soybean clone JCVI-FLGm-23B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540186.10.0GATA transcription factor 11 isoform X1
RefseqXP_028195023.10.0GATA transcription factor 11-like isoform X1
TrEMBLA0A445HRP00.0A0A445HRP0_GLYSO; GATA transcription factor 10 isoform A
TrEMBLI1LTK10.0I1LTK1_SOYBN; Uncharacterized protein
STRINGGLYMA12G29730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.25e-51GATA transcription factor 11