PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 468aa MW: 50843.4 Da PI: 7.8039

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G152600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78.1	1e-24	160	216	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ +rsYY+Ct+++C++kk ++ +++ ++v+ei+Y+++Hnh+ Glyma.12G152600.1.p 160 SDGYNWRKYGQKQVKNPMGSRSYYKCTHSNCCAKK-IKFCDHSGHVIEIVYKSQHNHD 216 7******************************98.999999*************7 PP
2	WRKY	91.2	8e-29	330	386	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK vkg+++ r+YYrCts+gCpv+k++e++ ++ k+++itY+g H+h+ Glyma.12G152600.1.p 330 DGYRWRKYGQKLVKGNPHFRNYYRCTSSGCPVRKHIETAVDNSKALIITYKGVHDHD 386 9*******************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	18.085	154	218	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	7.4E-22	156	218	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-20	158	218	IPR003657	WRKY domain
SMART	SM00774	1.2E-24	159	217	IPR003657	WRKY domain
Pfam	PF03106	1.3E-17	161	216	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.7E-30	313	388	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-26	322	388	IPR003657	WRKY domain
PROSITE profile	PS50811	30.618	323	388	IPR003657	WRKY domain
SMART	SM00774	3.5E-32	328	387	IPR003657	WRKY domain
Pfam	PF03106	1.2E-22	330	385	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MEEDEETQQR VTDSSLSTES RTSTPSDGAP PNSETLVHRS SLPHDLATHM QGSSTAHKGG 60 KAESKVSAQP PDEETIEKDA VEAPQKQTEN QLQSVCSTSL SELSPTSVSH SLSSALSPTV 120 SQQRPSPPKA NSVQVSKGDK GTPSDGTTLS SVSAVRASAS DGYNWRKYGQ KQVKNPMGSR 180 SYYKCTHSNC CAKKIKFCDH SGHVIEIVYK SQHNHDPPHK IDTTKESKLL PSSEPKEESS 240 VPKQSTKVLN NSDPSSSPKE PLQEAPCNGD KNLENSSNVE NGKIILKEKH VNDREPKRRL 300 NNGDLDSAVK HGKKPKFVVH ATEDVGISGD GYRWRKYGQK LVKGNPHFRN YYRCTSSGCP 360 VRKHIETAVD NSKALIITYK GVHDHDMPVP KKRHGPPSAS LVAAAAPASM NNVQFKKTGL 420 LQSQETEAQC SEDTEGELMG EAMDLEGEKA IESARTLLSI GFEIKPC*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MEEDEETQQR VTDSSLSTES RTSTPSDGAP PNSETLVHRS SLPHDLATHM QGSSTAHKGG  60
KAESKVSAQP PDEETIEKDA VEAPQKQTEN QLQSVCSTSL SELSPTSVSH SLSSALSPTV  120
SQQRPSPPKA NSVQVSKGDK GTPSDGTTLS SVSAVRASAS DGYNWRKYGQ KQVKNPMGSR  180
SYYKCTHSNC CAKKIKFCDH SGHVIEIVYK SQHNHDPPHK IDTTKESKLL PSSEPKEESS  240
VPKQSTKVLN NSDPSSSPKE PLQEAPCNGD KNLENSSNVE NGKIILKEKH VNDREPKRRL  300
NNGDLDSAVK HGKKPKFVVH ATEDVGISGD GYRWRKYGQK LVKGNPHFRN YYRCTSSGCP  360
VRKHIETAVD NSKALIITYK GVHDHDMPVP KKRHGPPSAS LVAAAAPASM NNVQFKKTGL  420
LQSQETEAQC SEDTEGELMG EAMDLEGEKA IESARTLLSI GFEIKPC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-25	316	388	2	74	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21502	0.0	leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SI37}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G152600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031238	0.0	KT031238.1 Glycine max clone HN_CCL_32 WRKY transcription factor (Glyma12g23950.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304517.1	0.0	WRKY transcription factor 44
Refseq	XP_028194618.1	0.0	probable WRKY transcription factor 32 isoform X1
Swissprot	P59583	1e-113	WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBL	A0A445HQN9	0.0	A0A445HQN9_GLYSO; Putative WRKY transcription factor 32 isoform A
TrEMBL	I1LT43	0.0	I1LT43_SOYBN; WRKY transcription factor
STRING	GLYMA12G23950.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5198	34	56
Representative plant	OGRP10318	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	1e-99	WRKY DNA-binding protein 32

Link Out ? help Back to Top
Phytozome	Glyma.12G152600.1.p
Entrez Gene	100127388

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]