PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G122800.1.p
Common NameGLYMA_12G122800, LOC100788819
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 259aa    MW: 28481.6 Da    PI: 7.5073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G122800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-1372118354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+Er+RR+riN  +++Lr+++P a      K++Ka+ L ++++++k+L
  Glyma.12G122800.1.p  72 KSHSEAERKRRARINAHLDTLRSVIPGA-----MKMDKASLLGEVIRHLKEL 118
                          58*************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.01869118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1072118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-1272120No hitNo description
Gene3DG3DSA:4.10.280.102.1E-1372121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1373122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1275124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-5157208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEMEDFLWGG GIAGDAPKRK SDGFEGSNGV IGSGCGSSFS LVLDRERGEL VEAPVRLERK  60
GVSTERSIEA LKSHSEAERK RRARINAHLD TLRSVIPGAM KMDKASLLGE VIRHLKELKK  120
NAAQACEGLM IPKDNDEISV EEQEGGLNGF PYSIRASLCC EYKPGLLSDI KQALDALHLM  180
ITRADIATLE GRMKNVFVII SSKEQNFEDA AYRQFLAGSV HQALKAVLNR FSVSEDILGT  240
RKRRRISIFS SSPLEDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240244RKRRR
2241245KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.201020.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G122800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937010.0BT093701.1 Soybean clone JCVI-FLGm-17L23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539965.10.0transcription factor bHLH30
RefseqXP_028194026.10.0transcription factor bHLH30-like
TrEMBLA0A0B2PJ880.0A0A0B2PJ88_GLYSO; Transcription factor bHLH30
TrEMBLI1LSB40.0I1LSB4_SOYBN; Uncharacterized protein
STRINGGLYMA12G14400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-33bHLH family protein