![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.12G118000.1.p | ||||||||
Common Name | GLYMA_12G118000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 228aa MW: 26380.4 Da PI: 7.7766 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62.4 | 8.9e-20 | 130 | 186 | 1 | 55 |
G2-like 1 kprlrWtpeLHe.rFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl+W eLH+ +Fv+av+ + G +kA Pk+ le+m+++gLt ehv+S LQkYRl Glyma.12G118000.1.p 130 KSRLVWQGELHHhQFVKAVNVMQvGLDKAQPKRTLEVMNIPGLTEEHVASRLQKYRL 186 68********7527****996533********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-6 | 11 | 87 | No hit | No description |
SuperFamily | SSF52172 | 2.42E-11 | 15 | 109 | IPR011006 | CheY-like superfamily |
SuperFamily | SSF46689 | 9.32E-11 | 128 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 129 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-14 | 130 | 187 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MAKCPTEVSF QFPADLRILA IDDDANIIER LICPYYILYN APTCSELCQK KKDCTDVILI 60 ETHMSNMDGY EFLQHVTKKI HVPAIAYGAC DYWIKPLHQN QFKIMWMWQH NSSNSQESDP 120 DVCYAPPGKK SRLVWQGELH HHQFVKAVNV MQVGLDKAQP KRTLEVMNIP GLTEEHVASR 180 LQKYRLNLKK SNKEVVQQDE MSLPNCIESR GRVGPFGRFD LDRFWRN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.12G118000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235211 | 8e-77 | AC235211.1 Glycine max strain Williams 82 clone GM_WBb0019L21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014627050.1 | 1e-62 | two-component response regulator ARR2 | ||||
TrEMBL | A0A0R0H445 | 1e-172 | A0A0R0H445_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HP27 | 1e-172 | A0A445HP27_GLYSO; Two-component response regulator ORR21 | ||||
STRING | GLYMA19G06550.2 | 4e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14524 | 5 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 6e-24 | response regulator 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.12G118000.1.p |