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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.12G096000.3.p |
| Common Name | GLYMA_12G096000 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
YABBY |
| Protein Properties |
Length: 176aa MW: 19693.5 Da PI: 9.0248 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.12G096000.3.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 171.7 | 4.7e-53 | 8 | 149 | 15 | 170 |
YABBY 15 CnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104
+f +vsvP++sl+++vtvrCGhC++llsvn+ + q+ + ++ ++++l ++e + k+ +++++++ + e
Glyma.12G096000.3.p 8 AQFSLQCCMVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDP--------QKQHLSFQEPSSKELGSSSKCSKI-APF----EA 84
567777789*********************************999995........667777777777666655555433.233....45 PP
YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++e+pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl
Glyma.12G096000.3.p 85 VEHELPRIPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 149
7899***999.9****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0010158 | Biological Process | abaxial cell fate specification |
| Sequence ? help Back to Top |
| Protein Sequence Length: 176 aa
Download sequence Send
to blast |
MHFVFFSAQF SLQCCMVSVP YSSLLTIVTV RCGHCANLLS VNMGASLQAF PPQDPQKQHL 60
SFQEPSSKEL GSSSKCSKIA PFEAVEHELP RIPPIRPTEK RHRVPSAYNR FIKEEIQRIK 120
ASNPDISHRE AFSSAAKNWA HFPHIHFGLK NLKLDGNKQE KLDQGEGAEK SNGFY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
