PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G081400.1.p
Common NameGLYMA_12G081400, LOC100785286
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 316aa    MW: 33859.6 Da    PI: 7.3138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G081400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073136158123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Glyma.12G081400.1.p 136 YECKTCNRTFPSFQALGGHRASH 158
                          99**********99999998887 PP
2zf-C2H213.20.00027223245123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Glyma.12G081400.1.p 223 HECSICGSEFTSGQALGGHMRRH 245
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-8135158No hitNo description
SMARTSM003550.052136158IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-13136160IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-8218245No hitNo description
SMARTSM003550.019223245IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076223250IPR007087Zinc finger, C2H2
PfamPF139122.3E-11223247IPR007087Zinc finger, C2H2
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEGLDSNNST HNSIAKGKRT KRMRLLSPCG VIVAAITTTT TVTSSTSSAN SGASSTTTYE  60
SEEEDMANCL ILLAQGGESR HHPRHDKQQV EDHGLENCDD GAIKTEEKGN SSNVNTTTAA  120
TTTAANNNTK VGFYIYECKT CNRTFPSFQA LGGHRASHKK PKLAAEEKKQ PLPPSPLPPP  180
TPSQLQHMIV TNYDRFEEGS VKSGPPISLQ LGNNGNNNKG KIHECSICGS EFTSGQALGG  240
HMRRHRASTN ANNVVDTTSC NTVITTTITA VPPRNILQLD LNLPAPEDDL REAKFQFTAT  300
SQVLVGTPAL VDCHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617380.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G081400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539794.10.0zinc finger protein ZAT5
TrEMBLI1LR940.0I1LR94_SOYBN; Uncharacterized protein
STRINGGLYMA12G08660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-46C2H2 family protein