PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G068100.2.p
Common NameGLYMA_12G068100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 812aa    MW: 88305.4 Da    PI: 5.6966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G068100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-076592127
                         --S---SGGGGTS.--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                         +kt+lC++f+     C++G+ C++aHg+
  Glyma.12G068100.2.p 65 WKTSLCSYFRSHNgSCSHGGACRYAHGE 92
                         8******7776658************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.8E-136198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-66297IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-56492IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3246493IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-56592IPR000571Zinc finger, CCCH-type
SuperFamilySSF549282.01E-7146227IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005901.21E-6150216No hitNo description
Gene3DG3DSA:3.30.70.3308.3E-7150216IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168746.876271811IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533354.01E-47273299IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.01E-47331465IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.01E-47501625IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.2E-64524625IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138471.2E-9569627IPR025714Methyltransferase domain
CDDcd024401.83E-6571625No hitNo description
PfamPF059581.0E-8694746IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1505.2E-64695750IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.01E-47698760IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300706738IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1505.2E-64786811IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.01E-47795811IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MAEPLSNTEL SSSKTLDPTN GHDSTSEPHQ TAPEDSQLNR EDDVVPTAKR KRDDDVEDRS  60
LHPLWKTSLC SYFRSHNGSC SHGGACRYAH GEEELRPRPD NTWDPTSERA KKALKTESDE  120
KRAVSEEVMM TEAVVDDGDD GCGANHALNI CLVHLPRKWS SENLRTFLSE QGIPFKHAKK  180
KKGMMIGFVT FEDEEQLKSS TMELEGKSIG NKTVKVANVL PRSFEKKSNA IVASRQELDE  240
ENAGVDVASS GTLDGETNND NLAKTRNVRD AVTPLAHMAY ADQLEQKTSS LMQILKKLTR  300
NARKACPNGV SLPEWILKSR EIGGLPCKLE GIIASPIVNG YRNKCEFSVG YSLEGKVTVG  360
FMLGNFREGV TAVEEAVDCP NVSTVACKYA TIFQEFLQDS DLPVWNRFKN TGFWRQLTVR  420
EGRTNGNVVD AETFSGVAEV MLIVQVSTAS FDDAKVAAEF KRLAQAFVAG ATSHCPILPL  480
TALVVQDHQG ISNVAPADAP LHSLPIPEAA GDPEVDENNN AKDVRIHDHI NNLQFSISPT  540
AFFQVNTLAA EKLYSLAGDW SCLGPDTLLF DICCGTGTIG LTLAHRVGMV IGIEMNASAV  600
SDAHRNAEIN GIKNVKFICS KAEDVMGSLL RGDANVAKEQ SDDPNVSGSS NDIPVDGTCP  660
EPENGEITSH SENNNAEVGG EVQKGISSEN GKTSLQQFKN VVAIVDPPRA GLHPTVIKAL  720
RTHPGLRRLV YISCNPETLV ANAIELCTPS PVKIEKGNKD NRGWRNMSSA GLARHRAKSM  780
PISEAFHPVK AMAVDLFPHT PHCELVMLLE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A3e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5xj2_A3e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5xj2_B3e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5xj2_C3e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5xj2_D3e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5zq0_A3e-1726863177371Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5zq8_A3e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5zq8_B3e-1726863176370Uncharacterized RNA methyltransferase SP_1029
5zth_A3e-1726863177371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.608340.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G068100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1385000.0BT138500.1 Medicago truncatula clone JCVI-FLMt-22E6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540739.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0R0H2D60.0A0A0R0H2D6_SOYBN; Uncharacterized protein
STRINGGLYMA12G07300.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]