PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 398aa MW: 45143.3 Da PI: 7.0042

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G051200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.1e-10	194	252	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ +++e+ Glyma.12G051200.1.p 194 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTHGMTAEN 252 9********************************************99998877776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	6.02E-5	124	132	No hit	No description
SuperFamily	SSF101447	6.02E-5	180	276	No hit	No description
SMART	SM00338	3.2E-16	190	254	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	192	255	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.7E-9	194	248	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.8E-11	194	245	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.5E-11	194	247	No hit	No description
CDD	cd14703	9.86E-24	195	244	No hit	No description
SuperFamily	SSF101447	6.02E-5	304	388	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MRKEETRGAL QRWGTWNGIS DPFCVLNLIL YCYRLQIWWA MDRDNKSPPP SSLYVKSSSS 60 SFSHDDISAM PENPPKNRGH RRAHSEIITL PDDLSFDADL LPDDDNDLLS LYLQFDQLDS 120 SSLPPPPPPP PPHNNINERS TRVRHQHSHS MDGSIHLEML LSAASAADDV SGGIDTKKAM 180 SADKLAELAL VDPKRAKRIW ANRQSAARSK ERKMRYISEL ERKVQTLQTE ATSLSAQLTL 240 LQRDTHGMTA ENSELKLRLQ TMEQQVHLQD ALNDALKEEI QHLKALTGQV MPNGGPVNFA 300 SFGGGQQFYP NNQAMHTLLA AQKFQQLQIH SQKQQQHQLQ QQQQFQHQLQ QQQQFHQQQQ 360 QLQLQQQLQQ QQQQQQQQQQ QQTAATGTVT STNGGHE*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MRKEETRGAL QRWGTWNGIS DPFCVLNLIL YCYRLQIWWA MDRDNKSPPP SSLYVKSSSS  60
SFSHDDISAM PENPPKNRGH RRAHSEIITL PDDLSFDADL LPDDDNDLLS LYLQFDQLDS  120
SSLPPPPPPP PPHNNINERS TRVRHQHSHS MDGSIHLEML LSAASAADDV SGGIDTKKAM  180
SADKLAELAL VDPKRAKRIW ANRQSAARSK ERKMRYISEL ERKVQTLQTE ATSLSAQLTL  240
LQRDTHGMTA ENSELKLRLQ TMEQQVHLQD ALNDALKEEI QHLKALTGQV MPNGGPVNFA  300
SFGGGQQFYP NNQAMHTLLA AQKFQQLQIH SQKQQQHQLQ QQQQFQHQLQ QQQQFHQQQQ  360
QLQLQQQLQQ QQQQQQQQQQ QQTAATGTVT STNGGHE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.40388	0.0	cotyledon

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G051200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092923	0.0	BT092923.1 Soybean clone JCVI-FLGm-23G2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541156.2	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-111	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	K7LT54	0.0	K7LT54_SOYBN; Uncharacterized protein
STRING	GLYMA12G05520.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	9e-89	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G051200.1.p
Entrez Gene	100810942

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]