PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G048700.1.p
Common NameGLYMA_12G048700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 316aa    MW: 36667.9 Da    PI: 7.7491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G048700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.5e-14461251398
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +++l +p +f+++ +++  +    +l  +sg +W v++  +kk++ +++++GW+ F k+n +   +f++F+++g ++f  +v++f 
  Glyma.12G048700.1.p  46 TKLLKVPEEFLKHLNEDLWS--NEVLIGPSGDKWLVTI--WKKGNDVYMKNGWSLFLKDNSVVLDEFFLFTYHGGNCF--HVQIFG 125
                          56789999999555444223..45789***********..*********************************99999..999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.89834127IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-1534127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1638126IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-939127IPR003340B3 DNA binding domain
CDDcd100171.52E-1139124No hitNo description
PfamPF023621.5E-1046125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-6238294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-6242295IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYLYQVSFQF LFHCSSITMG DFSLHENNMD YHQDNLAVFF TIIKNTKLLK VPEEFLKHLN  60
EDLWSNEVLI GPSGDKWLVT IWKKGNDVYM KNGWSLFLKD NSVVLDEFFL FTYHGGNCFH  120
VQIFGGNGLE RLCLEETRQE QAAIPQFFDL PFSNNASLFD GYEIKKTRQE QASIPSLART  180
KNKSKQRKTS AGSLHHHESK SCQEDLPFCN KALLSKDFPK PMSSIKIESS EACKLVESFT  240
SRDPHWKHLM TKCNVEDHCT LHIATEFACK YILEAVKQII LRNSEGKFWE VEVACLRYQN  300
KRYTQIYDRM GKIRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G048700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3216600.0KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539033.20.0B3 domain-containing protein Os11g0197600
RefseqXP_028186698.10.0B3 domain-containing protein Os11g0197600-like
TrEMBLK7LT300.0K7LT30_SOYBN; Uncharacterized protein
STRINGGLYMA12G05261.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Representative plantOGRP1159047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.19e-12B3 family protein