PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G230200.1.p
Common NameGLYMA_11G230200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 853aa    MW: 95122.8 Da    PI: 8.4569
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G230200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.55.9e-08225243119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG H+C++lCH+G CppC+
  Glyma.11G230200.1.p 225 CGVHRCIELCHPGACPPCR 243
                          ******************7 PP
2zf-NF-X118.15.9e-06385404120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+H C++ C+ G+CppC++
  Glyma.11G230200.1.p 385 CGRHACKRRCCDGDCPPCSE 404
                          ******************85 PP
3zf-NF-X117.49.6e-06406430119
             zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                          CG      +HkC ++CH+GpC pCp
  Glyma.11G230200.1.p 406 CGrklrckNHKCPSPCHRGPCAPCP 430
                          777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.04E-577154No hitNo description
PROSITE patternPS01359082148IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.89E-8215263No hitNo description
SMARTSM004381.5E-4225244IPR000967Zinc finger, NF-X1-type
PfamPF014223.1E-6225243IPR000967Zinc finger, NF-X1-type
CDDcd060086.20E-9268315No hitNo description
SMARTSM004380.0028278297IPR000967Zinc finger, NF-X1-type
PfamPF014220.084278296IPR000967Zinc finger, NF-X1-type
CDDcd060083.12E-9322371No hitNo description
SMARTSM004380.16332352IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029332351IPR000967Zinc finger, NF-X1-type
CDDcd060082.02E-8375423No hitNo description
SMARTSM004380.0092385404IPR000967Zinc finger, NF-X1-type
PfamPF014228.2E-4385403IPR000967Zinc finger, NF-X1-type
CDDcd060083.19E-11402450No hitNo description
PfamPF014220.0031406430IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0079412431IPR000967Zinc finger, NF-X1-type
SMARTSM00438210469490IPR000967Zinc finger, NF-X1-type
PfamPF01422110479489IPR000967Zinc finger, NF-X1-type
SMARTSM0043854498543IPR000967Zinc finger, NF-X1-type
PfamPF0142232498507IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9580607IPR000967Zinc finger, NF-X1-type
PfamPF014220.14580590IPR000967Zinc finger, NF-X1-type
SMARTSM004380.067617635IPR000967Zinc finger, NF-X1-type
PfamPF014222.1619634IPR000967Zinc finger, NF-X1-type
SMARTSM0043869680702IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MTSPWNKIHI HHSHPSPSPP PPLSDSDSDD CGGDSSSSAP LRHSDLSDSI FKPYLELSGH  60
SGADLSKIQS FLTSSSAGAL SCLICLERIK PSDPTWSCSS LCFAVFHLFC IQSWARQASD  120
LAAARAATRL PISPATASAS ALWNCPKCRS EYPKSHIPKT YFCFCGKIEN PPNDPWILPH  180
SCGEVCGRPL KHIKVRCLCG CLEDVRRCGF KEFSCNKPCS KFLDCGVHRC IELCHPGACP  240
PCRTRGVHAC QCAKVKEERE CCDRVFQCGN PCEKRLGCGK HVCERGCHSG KCGECPLKGK  300
RTCPCGKRVY EGMPCDAPVQ LCGATCDKML PCGYHRCPER CHRGQCVETC RVVVKKSCRC  360
GSLKKDVPCY QDLACERKCQ RMRDCGRHAC KRRCCDGDCP PCSEICGRKL RCKNHKCPSP  420
CHRGPCAPCP IMVTISCACG ETRFEVPCGT EMDNKPPRCP KPCPITPLCR HASNIKPHKC  480
HYGACHPCRL PCAKEYQCGH TCKLRCHGAK PPPNPEFTLK PKKKKIIQQS ESVPGTPCPP  540
CPELVWRSCV GKHIGAERMM VCSDKSQFSC ENLCGNPVPC GNHYCTKTCH ALENQLQGSQ  600
PCEDCYLSCQ KEREPACPHH CPRRCHPGDC PPCKVLIKRS CHCGAMVHVF ECLYYNSLSA  660
KGQETVRSCG GPCHRKLPNC THLCPETCHS GQCTNAEKCC KKVTVRCKCH TLKKEWVCQD  720
VQAAYHLAGC HPRDIPKNQF GIGLIPCNSD CNSKVQVVES EQQLRKTRVT EVQEPDVEKS  780
VRKRRKRREQ VLESKETSKL QKIISRMKRL LLFVFILVIL LAATYYGYKG LLWLNDWMNE  840
VDERRQRYSR IK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1781787RKRRKRR
2781788RKRRKRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.397140.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G230200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-171AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197770.10.0NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLI1LMS00.0I1LMS0_SOYBN; Uncharacterized protein
STRINGGLYMA11G35320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors