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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.11G156700.2.p |
| Common Name | GLYMA_11G156700, LOC100813972 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
Trihelix |
| Protein Properties |
Length: 342aa MW: 38251.9 Da PI: 9.9 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.11G156700.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 53.2 | 7.7e-17 | 53 | 138 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + ++ + ss++p++++l+
Glyma.11G156700.2.p 53 EWSEGAVTTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVsaraNSTKSPKTQTQCKNKIESMKKRYRSESATTADA----SSSWPLYSRLD 138
5*************************************87777777888999*****************999984....779*****997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MEDNNNNNNN KAEKQQDDSS HHHPSLLLPN PNHSTTINNN TKEDHHHRLK RDEWSEGAVT 60
TLLEAYEAKW VLRNRAKLKG HDWEDVAKHV SARANSTKSP KTQTQCKNKI ESMKKRYRSE 120
SATTADASSS WPLYSRLDVL LRGTAPISSS LSPPPIAAAR PIIAAPSSQS PHNQALVLLE 180
PPPSVAPPPI AIAQNSYGSN GVERLLAKED GIGAKSSEHV SNKNPMDSDS STPALYSEKD 240
KVRCNKRKMK SENNKRRRNN NNEDMEIVES IRWLAEMVVR SEQTRMDTMK EIERMRVEAE 300
AKRGEMELKR TEIIANTQLE IAKIFASVNK GVDSSLRIGR S*
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 1e-100 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 3e-91 | sequence-specific DNA binding transcription factors |
