PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G124300.1.p
Common NameGLYMA_11G124300, LOC100809844
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 338aa    MW: 38771.2 Da    PI: 7.6953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G124300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.5e-15381161397
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          +++l +p +f+++ ++    s   +l  +sg +W+v++   kk++ +++ +GW++F k+n +   +f++F+++g ++f  +v++f
  Glyma.11G124300.1.p  38 TKLLKVPEEFLKHLNE--DLSSNAVLIGPSGDKWQVTI--LKKGNNVYMNNGWSQFLKDNSVVLDEFLLFTYHGGNCF--YVQIF 116
                          56799******55554..47779***************..********************************999999..99887 PP
2B3581.7e-18241335399
                          EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                            +t+ +v  ++ l +  +fa ++     e  k+++l +++g+ Wev+++    ++++ + +t+GW +Fv++n+L  gD+++F+l++  e
  Glyma.11G124300.1.p 241 HLMTKCNVEDHCTLHIATQFACKYiP---EVVKQIILWNSEGKFWEVEVTClrYQNKRYTRFTTGWGKFVRDNKLMKGDTCIFELED--E 325
                          5677889999**********988852...34457***************875433344489***********************965..6 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                           ++ v++fr+
  Glyma.11G124300.1.p 326 NHMSVHIFRT 335
                          6679***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-2025119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.85826119IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-1926119IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-1231119IPR003340B3 DNA binding domain
PfamPF023627.9E-1237116IPR003340B3 DNA binding domain
CDDcd100171.03E-1241117No hitNo description
Gene3DG3DSA:2.40.330.108.2E-25231336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-23234336IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-9239336IPR003340B3 DNA binding domain
PROSITE profilePS5086313.916239336IPR003340B3 DNA binding domain
PfamPF023621.1E-15242335IPR003340B3 DNA binding domain
CDDcd100176.97E-20243334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MFHCSSITIT MGDFSLHENN MDYHQDNPAV FFTIINNTKL LKVPEEFLKH LNEDLSSNAV  60
LIGPSGDKWQ VTILKKGNNV YMNNGWSQFL KDNSVVLDEF LLFTYHGGNC FYVQIFCGNG  120
LERLCLKETR QEQAVTPQFL DLTFSNKALI SDGCEIKKTS QEQASTPSLV RITNKSKQRK  180
TSAGSFLHHE SKSSCQEDLP FSNKALLSKD FPKPLSSIKF ETSEACKLAE SFTSRNPHWK  240
HLMTKCNVED HCTLHIATQF ACKYIPEVVK QIILWNSEGK FWEVEVTCLR YQNKRYTRFT  300
TGWGKFVRDN KLMKGDTCIF ELEDENHMSV HIFRTSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G124300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3216600.0KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539033.20.0B3 domain-containing protein Os11g0197600
RefseqXP_028186698.10.0B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0B2PF620.0A0A0B2PF62_GLYSO; B3 domain-containing protein
TrEMBLK7LPD00.0K7LPD0_SOYBN; Uncharacterized protein
STRINGGLYMA11G13231.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Representative plantOGRP1159047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-23B3 family protein