PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G109000.1.p
Common NameGLYMA_11G109000, LOC100782777
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 377aa    MW: 41524.9 Da    PI: 7.7142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G109000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-10325427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                          +Cr+f+r G C+yG+rC++ H++
  Glyma.11G109000.1.p  3 DICRNFQR-GSCQYGERCRYLHVQ 25
                         69******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-4125IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-5327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRDICRNFQR GSCQYGERCR YLHVQQQRKP NVNGFGGQSS SYQQQNTNPF GFGSGSQQQQ  60
QQKGNPFGFG KQNSSQLNGG PHSEHKPNQY KPFENKWNRQ SSKPQQNGVK SENNSKQTDH  120
ICTDPENCKR QIAVDFEQEK PLWILTCYSH CKGAPCDIVG DISYEELRAS AYEDAKRGMN  180
LQSIVEKERN ILNSKLVEFQ KLLSEPYQIP ISSSLGSPTP QSIVANANAN PFSTSQSNGP  240
LSVSSFSQLS TPLNMGFERP SAPLTNTLTK PGFFGSGGNS LASNNAANLN SSAVFGVQSG  300
PYSTPVDLNM FPGSTQQTLT AFNNSDPTTM FQTTPDVQLS NMSQVEKVSV DPSIWLKEKW  360
NPGEIPEEAP PDTFVR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.250680.0flower| leaf| seed coat| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G109000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932070.0BT093207.1 Soybean clone JCVI-FLGm-17A15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590858.10.0zinc finger CCCH domain-containing protein 16 isoform X1
RefseqXP_028192106.10.0zinc finger CCCH domain-containing protein 16-like isoform X1
TrEMBLA0A445I0080.0A0A445I008_GLYSO; Zinc finger CCCH domain-containing protein 16 isoform A
TrEMBLI1LJ340.0I1LJ34_SOYBN; Uncharacterized protein
STRINGGLYMA11G11630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-65C3H family protein