PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G065000.2.p | ||||||||
Common Name | GLYMA_11G065000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 330aa MW: 35233.7 Da PI: 5.8127 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 73 | 4.4e-23 | 247 | 309 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++ ++e++kl+se+ Glyma.11G065000.2.p 247 ERELKKQKRKQSNRESARRSRLRKQAECEELQKRVESLGSENQTLREELQRVSEECKKLTSEN 309 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 4.3E-22 | 7 | 79 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 8.4E-19 | 242 | 306 | No hit | No description |
Pfam | PF00170 | 3.1E-20 | 247 | 309 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.1E-21 | 247 | 311 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.082 | 249 | 312 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.73E-11 | 250 | 306 | No hit | No description |
CDD | cd14702 | 3.38E-23 | 252 | 302 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 254 | 269 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGTGEESTAK VPKPSSTSSI QAYYAPGATP PAFFASNIAS PTPHSYMWGS QHPLIPPYST 60 PVPYPAIYPP GNVYAHPSMA MTLSTTQNGT EFVGKGSDEK DRVSAKSSKA VSANNGSKAG 120 DNGKASSGPR NDGTSQSAES GSEGSSDASD ENTNQQESAT NKKGSFDQML VDGANARNNS 180 VSIIPQPGNP AVSMSPTSLN IGMNLWNASP AGDEAAKMRQ NQSSGAVTPP TIMGREVALG 240 EHWIQDEREL KKQKRKQSNR ESARRSRLRK QAECEELQKR VESLGSENQT LREELQRVSE 300 ECKKLTSEND SIKEELERLC GPEAVANLE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 263 | 269 | RRSRLRK |
2 | 263 | 270 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7256 | 0.0 | cotyledon| hypocotyl| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G065000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | SOYGBFA | 0.0 | L01447.1 Glycine max G-box binding factor (GBF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014619014.1 | 0.0 | G-box binding factor isoform X4 | ||||
Refseq | XP_028191177.1 | 0.0 | G-box-binding factor 1-like isoform X2 | ||||
Swissprot | P42774 | 6e-91 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | K7LNE0 | 0.0 | K7LNE0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G06960.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 3e-85 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G065000.2.p |
Entrez Gene | 547788 |