PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G053600.1.p
Common NameGLYMA_11G053600, LOC100783682
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 178aa    MW: 19365.9 Da    PI: 9.8252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G053600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-173281255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Glyma.11G053600.1.p 32 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 81
                         7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-303290IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-213290IPR016177DNA-binding domain
SMARTSM003801.1E-373295IPR001471AP2/ERF domain
CDDcd000185.52E-263291No hitNo description
PfamPF008475.5E-113281IPR001471AP2/ERF domain
PROSITE profilePS5103222.3133289IPR001471AP2/ERF domain
PRINTSPR003672.7E-113344IPR001471AP2/ERF domain
PRINTSPR003672.7E-117191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEGEGRRREG GERETATAAA TRKVVEGADQ RRYKGIRMRK WGKWVAEIRE PNKRSRIWLG  60
SYSTPVAAAR AYDTAVFYLR GPSARLNFPE LLIGEGAAAL TGGCDMSAAS IRKKASEVGA  120
RVDALQATLH HHHHHVVPPR QLLSASCGGG SGDFAVRVVD LNKMPEPESS DCEWNVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-152796980Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.385000.0meristem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G053600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0990200.0BT099020.1 Soybean clone JCVI-FLGm-13I20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539348.11e-128ethylene-responsive transcription factor ERF011
RefseqXP_028188668.11e-128ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH949e-55ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A0R4J4G11e-127A0A0R4J4G1_SOYBN; Uncharacterized protein
TrEMBLA0A445HXD01e-127A0A445HXD0_GLYSO; Ethylene-responsive transcription factor ERF010
STRINGGLYMA11G05700.21e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.14e-55DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]